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  5. PSME_00009672-RA

PSME_00009672-RA


Description : (at5g48900 : 608.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p40973|pel_lillo : 427.0) Pectate lyase precursor (EC 4.2.2.2) - Lilium longiflorum (Trumpet lily) & (reliability: 1216.0) & (original description: no original description)


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00009672-RA
Cluster HCCA clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
407495 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_12542 No alias pectate lyase 0.02 Orthogroups_2024-Update
A4A49_16129 No alias putative pectate lyase 18 0.03 Orthogroups_2024-Update
A4A49_23917 No alias putative pectate lyase 13 0.04 Orthogroups_2024-Update
A4A49_24630 No alias putative pectate lyase 3 0.02 Orthogroups_2024-Update
At1g11920 No alias Putative pectate lyase 2 [Source:UniProtKB/Swiss-Prot;Acc:O65388] 0.03 Orthogroups_2024-Update
At1g14420 No alias Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2] 0.04 Orthogroups_2024-Update
At1g67750 No alias Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8] 0.04 Orthogroups_2024-Update
At3g24230 No alias Probable pectate lyase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM5] 0.03 Orthogroups_2024-Update
At3g54920 No alias Probable pectate lyase 13... 0.02 Orthogroups_2024-Update
At4g13710 No alias Probable pectate lyase 15... 0.04 Orthogroups_2024-Update
Brara.F00890.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.G02558.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.I00732.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Brara.K00935.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Glyma.08G296900 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
Glyma.13G145900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G126500 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.18G255900 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
LOC_Os06g05260 No alias pectate lyase precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_10430145g0030 No alias (at4g13210 : 482.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
MA_91467g0010 No alias (at4g24780 : 570.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Mp8g00770.1 No alias pectate lyase 0.03 Orthogroups_2024-Update
PSME_00017512-RA No alias (at4g24780 : 545.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00043773-RA No alias (at1g67750 : 590.0) Pectate lyase family protein;... 0.04 Orthogroups_2024-Update
Potri.003G175900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.011G008000 No alias root hair specific 14 0.03 Orthogroups_2024-Update
Potri.012G091500 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.015G087800 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Pp1s173_162V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Pp1s409_2V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Pp1s92_84V6 No alias F12A21.12; pectate lyase family protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Sobic.004G091000.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Sobic.010G034200.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Solyc03g111690 No alias Pectate lyase family protein (AHRD V3.3 *** AT1G67750.1) 0.06 Orthogroups_2024-Update
Sopen03g030810 No alias Pectate lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 162 346
No external refs found!