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  5. PSME_00009703-RA

PSME_00009703-RA


Description : (at1g19270 : 101.0) DA1 (DA1); CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: LIM domain-containing protein (TAIR:AT4G36860.1); Has 3538 Blast hits to 2617 proteins in 167 species: Archae - 0; Bacteria - 18; Metazoa - 3009; Fungi - 63; Plants - 177; Viruses - 0; Other Eukaryotes - 271 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description)


Gene families : OG_42_0000650 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000650_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00009703-RA
Cluster HCCA clusters: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
Bradi4g02760 No alias LIM domain-containing protein 0.04 Orthogroups_2024-Update
Bradi4g42580 No alias LIM domain-containing protein 0.03 Orthogroups_2024-Update
Potri.009G111500 No alias DA1 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001781 Znf_LIM 78 116
No external refs found!