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  5. PSME_00009714-RA

PSME_00009714-RA


Description : (at1g06710 : 930.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6; Bacteria - 56; Metazoa - 772; Fungi - 1057; Plants - 62952; Viruses - 0; Other Eukaryotes - 2380 (source: NCBI BLink). & (q76c99|rf1_orysa : 306.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1860.0) & (original description: no original description)


Gene families : OG_42_0009347 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009347_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00009714-RA
Cluster HCCA clusters: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Brara.J00461.1 No alias mitochondrial transcript stability factor *(MTSF1) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 931 954
IPR002885 Pentatricopeptide_repeat 854 887
IPR002885 Pentatricopeptide_repeat 752 781
IPR002885 Pentatricopeptide_repeat 250 276
IPR002885 Pentatricopeptide_repeat 502 525
IPR002885 Pentatricopeptide_repeat 788 836
IPR002885 Pentatricopeptide_repeat 346 388
IPR002885 Pentatricopeptide_repeat 279 328
IPR002885 Pentatricopeptide_repeat 527 576
IPR002885 Pentatricopeptide_repeat 416 464
IPR002885 Pentatricopeptide_repeat 683 732
IPR002885 Pentatricopeptide_repeat 965 1012
IPR002885 Pentatricopeptide_repeat 597 646
No external refs found!