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  5. Sopen05g023540

Sopen05g023540


Description : Transposase family tnp2


Gene families : OG_42_0000101 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g023540
Cluster HCCA clusters: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
A4A49_41017 No alias hypothetical protein 0.03 Orthogroups_2024-Update
LOC_Os10g21980 No alias transposon protein, putative, CACTA, En/Spm sub-class, expressed 0.02 Orthogroups_2024-Update
Solyc10g055380 No alias No description available 0.04 Orthogroups_2024-Update
Sopen01g021020 No alias Transposase family tnp2 0.03 Orthogroups_2024-Update
Sopen06g007570 No alias Transposase family tnp2 0.03 Orthogroups_2024-Update
Sopen08g011050 No alias Transposase-associated domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR029480 Transpos_assoc 3 70
IPR004242 Transposase_21 281 474
No external refs found!