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  5. PSME_00009796-RA

PSME_00009796-RA


Description : (at5g57250 : 267.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 71706 Blast hits to 14592 proteins in 301 species: Archae - 6; Bacteria - 54; Metazoa - 648; Fungi - 890; Plants - 68117; Viruses - 0; Other Eukaryotes - 1991 (source: NCBI BLink). & (q76c99|rf1_orysa : 236.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 534.0) & (original description: no original description)


Gene families : OG_42_0006661 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006661_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00009796-RA
Cluster HCCA clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
PSME_00036278-RA No alias (at5g57250 : 182.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 455 482
IPR002885 Pentatricopeptide_repeat 91 121
IPR002885 Pentatricopeptide_repeat 485 534
IPR002885 Pentatricopeptide_repeat 555 601
IPR002885 Pentatricopeptide_repeat 405 442
IPR002885 Pentatricopeptide_repeat 124 172
IPR002885 Pentatricopeptide_repeat 263 310
IPR002885 Pentatricopeptide_repeat 19 67
IPR002885 Pentatricopeptide_repeat 337 381
IPR002885 Pentatricopeptide_repeat 193 240
No external refs found!