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Description : (at3g02060 : 81.6) DEAD/DEAH box helicase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription-repair-coupling factor (InterPro:IPR005118), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Transcription factor CarD (InterPro:IPR003711), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT2G01440.1); Has 31156 Blast hits to 30938 proteins in 2896 species: Archae - 262; Bacteria - 19852; Metazoa - 1548; Fungi - 988; Plants - 649; Viruses - 13; Other Eukaryotes - 7844 (source: NCBI BLink). & (reliability: 163.2) & (original description: no original description)
Gene families : OG_42_0005308 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005308_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00010012-RA | |
| Cluster | HCCA clusters: Cluster_208 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0004427 | inorganic diphosphatase activity | IEP | Predicted GO |
| CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
| BP | GO:0005984 | disaccharide metabolic process | IEP | Predicted GO |
| BP | GO:0005985 | sucrose metabolic process | IEP | Predicted GO |
| BP | GO:0005986 | sucrose biosynthetic process | IEP | Predicted GO |
| BP | GO:0006281 | DNA repair | IEP | Predicted GO |
| BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
| BP | GO:0009312 | oligosaccharide biosynthetic process | IEP | Predicted GO |
| MF | GO:0009975 | cyclase activity | IEP | Predicted GO |
| MF | GO:0009976 | tocopherol cyclase activity | IEP | Predicted GO |
| MF | GO:0016791 | phosphatase activity | IEP | Predicted GO |
| MF | GO:0019203 | carbohydrate phosphatase activity | IEP | Predicted GO |
| MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
| MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | Predicted GO |
| BP | GO:0046351 | disaccharide biosynthetic process | IEP | Predicted GO |
| MF | GO:0050307 | sucrose-phosphate phosphatase activity | IEP | Predicted GO |
| MF | GO:0050308 | sugar-phosphatase activity | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |