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  5. PSME_00010280-RA

PSME_00010280-RA


Description : (at4g02780 : 395.0) Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesis; GA REQUIRING 1 (GA1); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G79460.1); Has 1979 Blast hits to 1971 proteins in 256 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 61; Plants - 1817; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (o04408|ksa_pea : 389.0) Ent-kaurene synthase A, chloroplast precursor (EC 5.5.1.13) (Ent-copalyl diphosphate synthase) (KSA) - Pisum sativum (Garden pea) & (reliability: 790.0) & (original description: no original description)


Gene families : OG_42_0000258 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00010280-RA
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
A4A49_59252 No alias (-)-camphenetricyclene synthase, chloroplastic 0.05 Orthogroups_2024-Update
Glyma.06G302200 No alias terpene synthase-like sequence-1,8-cineole 0.03 Orthogroups_2024-Update
Glyma.12G197500 No alias terpene synthase 02 0.03 Orthogroups_2024-Update
Glyma.13G304700 No alias terpene synthase 02 0.02 Orthogroups_2024-Update
MA_10435955g0010 No alias (o04408|ksa_pea : 162.0) Ent-kaurene synthase A,... 0.03 Orthogroups_2024-Update
MA_1830g0010 No alias (p59287|cass_ricco : 269.0) Casbene synthase,... 0.03 Orthogroups_2024-Update
MA_343069g0010 No alias (o04408|ksa_pea : 131.0) Ent-kaurene synthase A,... 0.03 Orthogroups_2024-Update
MA_8002141g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_9401581g0010 No alias (o04408|ksa_pea : 146.0) Ent-kaurene synthase A,... 0.03 Orthogroups_2024-Update
PSME_00003265-RA No alias (at4g02780 : 372.0) Catalyzes the conversion of... 0.03 Orthogroups_2024-Update
PSME_00025979-RA No alias (p93665|dcs1_goshi : 237.0) (+)-delta-cadinene synthase... 0.04 Orthogroups_2024-Update
PSME_00030201-RA No alias (at4g02780 : 365.0) Catalyzes the conversion of... 0.05 Orthogroups_2024-Update
PSME_00034457-RA No alias (at4g16740 : 192.0) Encodes an (E,E)-alpha-farnesene... 0.04 Orthogroups_2024-Update
PSME_00041351-RA No alias (at1g70080 : 113.0) Terpenoid cyclases/Protein... 0.04 Orthogroups_2024-Update
Potri.T001000 No alias terpene synthase-like sequence-1,8-cineole 0.02 Orthogroups_2024-Update
Solyc01g105880 No alias Monoterpenoid synthase 2 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA InterProScan predictions
MF GO:0003824 catalytic activity IEA InterProScan predictions
MF GO:0010333 terpene synthase activity IEA InterProScan predictions
MF GO:0016829 lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0050662 coenzyme binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001330 PFTB_repeat 118 136
IPR001906 Terpene_synth_N 252 459
IPR005630 Terpene_synthase_metal-bd 502 769
No external refs found!