PSME_00010288-RA

Description : no hits & (original description: no original description)

Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00010288-RA
Cluster	HCCA clusters: Cluster_354

Target	Alias	Description	ECC score	Gene Family Method
Cre06.g264650	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g265250	No alias	Histone superfamily protein	0.04	Orthogroups_2024-Update
Cre06.g267950	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre06.g274850	No alias	Histone superfamily protein	0.05	Orthogroups_2024-Update
Cre06.g276600	No alias	Histone superfamily protein	0.04	Orthogroups_2024-Update
Cre06.g276850	No alias	Histone superfamily protein	0.04	Orthogroups_2024-Update
Cre12.g504650	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre12.g504800	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre12.g506300	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre12.g506500	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre16.g661450	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre17.g708150	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre17.g708700	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre17.g709050	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Sopen10g004700	No alias	Core histone H2A/H2B/H3/H4	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004619	phosphoglycerate mutase activity	IEP	Predicted GO
CC	GO:0005737	cytoplasm	IEP	Predicted GO
BP	GO:0005996	monosaccharide metabolic process	IEP	Predicted GO
BP	GO:0006006	glucose metabolic process	IEP	Predicted GO
BP	GO:0006007	glucose catabolic process	IEP	Predicted GO
MF	GO:0016866	intramolecular transferase activity	IEP	Predicted GO
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Predicted GO
BP	GO:0019318	hexose metabolic process	IEP	Predicted GO
BP	GO:0019320	hexose catabolic process	IEP	Predicted GO
MF	GO:0030145	manganese ion binding	IEP	Predicted GO
BP	GO:0044282	small molecule catabolic process	IEP	Predicted GO
BP	GO:0046365	monosaccharide catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	48	140

External Links

No external refs found!