1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00010351-RA

PSME_00010351-RA


Description : (at2g26560 : 361.0) Encodes a lipid acyl hydrolase with wide substrate specificity that accumulates upon infection by fungal and bacterial pathogens. Protein is localized in the cytoplasm in healthy leaves, and in membranes in infected cells. Plays a role in cell death and differentially affects the accumulation of oxylipins. Contributes to resistance to virus.; phospholipase A 2A (PLA2A); FUNCTIONS IN: lipase activity, nutrient reservoir activity; INVOLVED IN: in 6 processes; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (TAIR:AT4G37070.2); Has 2114 Blast hits to 2104 proteins in 375 species: Archae - 0; Bacteria - 479; Metazoa - 231; Fungi - 198; Plants - 897; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink). & (p15478|pat5_soltu : 262.0) Patatin T5 precursor (Potato tuber protein) - Solanum tuberosum (Potato) & (reliability: 722.0) & (original description: no original description)


Gene families : OG_42_0000167 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000167_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00010351-RA
Cluster HCCA clusters: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
A4A49_11197 No alias patatin-like protein 2 0.02 Orthogroups_2024-Update
Brara.C02495.1 No alias phospholipase-A2 *(pPLA2-II)) 0.03 Orthogroups_2024-Update
GRMZM5G814389 No alias phospholipase A 2A 0.03 Orthogroups_2024-Update
GRMZM5G865811 No alias phospholipase A 2A 0.03 Orthogroups_2024-Update
Glyma.06G037900 No alias phospholipase A 2A 0.03 Orthogroups_2024-Update
LOC_Os12g36610 No alias patatin, putative, expressed 0.03 Orthogroups_2024-Update
MA_10436005g0010 No alias (at2g26560 : 305.0) Encodes a lipid acyl hydrolase with... 0.04 Orthogroups_2024-Update
MA_47191g0010 No alias (at4g37060 : 325.0) Patatin-related phospholipase A.... 0.04 Orthogroups_2024-Update
Potri.019G014900 No alias PATATIN-like protein 5 0.02 Orthogroups_2024-Update
Potri.T051200 No alias Acyl transferase/acyl hydrolase/lysophospholipase... 0.03 Orthogroups_2024-Update
Potri.T051800 No alias Acyl transferase/acyl hydrolase/lysophospholipase... 0.02 Orthogroups_2024-Update
Potri.T096000 No alias phospholipase A 2A 0.03 Orthogroups_2024-Update
Pp1s141_142V6 No alias patatin t5 0.02 Orthogroups_2024-Update
Sobic.002G228700.1 No alias phospholipase-A2 *(pPLA2-II)) 0.03 Orthogroups_2024-Update
Solyc02g065090 No alias Patatin (AHRD V3.3 *** K4B6U4_SOLLC) 0.05 Orthogroups_2024-Update
Solyc02g090660 No alias Patatin (AHRD V3.3 *-* K4BCL5_SOLLC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
InterPro domains Description Start Stop
IPR002641 PNPLA_dom 19 220
No external refs found!