PSME_00010410-RA

Description : (q8gu88|pdr7_orysa : 1693.0) Putative pleiotropic drug resistance protein 7 - Oryza sativa (Rice) & (at1g15520 : 1650.0) ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers, stomata and roots.; pleiotropic drug resistance 12 (PDR12); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 11 (TAIR:AT1G66950.1); Has 377983 Blast hits to 279992 proteins in 3946 species: Archae - 7615; Bacteria - 304057; Metazoa - 8776; Fungi - 6428; Plants - 5794; Viruses - 2; Other Eukaryotes - 45311 (source: NCBI BLink). & (reliability: 3300.0) & (original description: no original description)

Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00010410-RA
Cluster	HCCA clusters: Cluster_236

Target	Alias	Description	ECC score	Gene Family Method
101338	No alias	pleiotropic drug resistance 11	0.04	Orthogroups_2024-Update
412710	No alias	pleiotropic drug resistance 12	0.05	Orthogroups_2024-Update
417266	No alias	pleiotropic drug resistance 12	0.04	Orthogroups_2024-Update
426328	No alias	pleiotropic drug resistance 6	0.02	Orthogroups_2024-Update
429390	No alias	pleiotropic drug resistance 12	0.03	Orthogroups_2024-Update
441720	No alias	pleiotropic drug resistance 7	0.03	Orthogroups_2024-Update
99541	No alias	pleiotropic drug resistance 12	0.02	Orthogroups_2024-Update
Brara.E02519.1	No alias	subfamily ABCG transporter	0.05	Orthogroups_2024-Update
Brara.F01068.1	No alias	subfamily ABCG transporter	0.05	Orthogroups_2024-Update
Cre01.g007000	No alias	pleiotropic drug resistance 3	0.02	Orthogroups_2024-Update
GRMZM2G143139	No alias	pleiotropic drug resistance 12	0.02	Orthogroups_2024-Update
HORVU3Hr1G071470.1	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
HORVU4Hr1G081040.4	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
HORVU7Hr1G037750.28	No alias	subfamily ABCG transporter	0.04	Orthogroups_2024-Update
Kfl00010_0550	kfl00010_0550_v1.1	(q76cu2\|pdr1_tobac : 717.0) Pleiotropic drug resistance...	0.02	Orthogroups_2024-Update
Kfl00018_0500	kfl00018_0500_v1.1	(q8gu90\|pdr3_orysa : 1455.0) Pleiotropic drug resistance...	0.02	Orthogroups_2024-Update
LOC_Os12g13720	No alias	Plant PDR ABC transporter associated domain containing...	0.03	Orthogroups_2024-Update
MA_10426781g0010	No alias	(at2g36380 : 1292.0) pleiotropic drug resistance 6...	0.04	Orthogroups_2024-Update
MA_10430834g0010	No alias	(at1g59870 : 357.0) ATP binding cassette transporter....	0.03	Orthogroups_2024-Update
MA_12965g0010	No alias	(q949g3\|pdr1_nicpl : 544.0) Pleiotropic drug resistance...	0.06	Orthogroups_2024-Update
MA_135152g0010	No alias	(q5z9s8\|pdr12_orysa : 1938.0) Pleiotropic drug...	0.04	Orthogroups_2024-Update
MA_3894g0010	No alias	(q76cu2\|pdr1_tobac : 501.0) Pleiotropic drug resistance...	0.05	Orthogroups_2024-Update
PSME_00001267-RA	No alias	(q5z9s8\|pdr12_orysa : 1556.0) Pleiotropic drug...	0.04	Orthogroups_2024-Update
PSME_00001761-RA	No alias	(q5z9s8\|pdr12_orysa : 1822.0) Pleiotropic drug...	0.03	Orthogroups_2024-Update
PSME_00009473-RA	No alias	(at2g26910 : 1773.0) pleiotropic drug resistance 4...	0.04	Orthogroups_2024-Update
PSME_00013320-RA	No alias	(q8gu88\|pdr7_orysa : 1886.0) Putative pleiotropic drug...	0.03	Orthogroups_2024-Update
Potri.001G048800	No alias	pleiotropic drug resistance 12	0.03	Orthogroups_2024-Update
Potri.001G048900	No alias	pleiotropic drug resistance 12	0.02	Orthogroups_2024-Update
Potri.018G032900	No alias	pleiotropic drug resistance 12	0.02	Orthogroups_2024-Update
Pp1s15_137V6	No alias	atp-binding cassette	0.02	Orthogroups_2024-Update
Seita.1G041000.1	No alias	subfamily ABCG transporter	0.04	Orthogroups_2024-Update
Seita.2G179600.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
Seita.4G181500.1	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Seita.5G221500.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
Seita.9G001100.1	No alias	subfamily ABCG transporter	0.04	Orthogroups_2024-Update
Seita.9G187800.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
Sobic.001G190900.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
Sobic.004G087800.1	No alias	subfamily ABCG transporter	0.04	Orthogroups_2024-Update
Solyc12g100180	No alias	Pleiotropic drug resistance ABC transporter (AHRD V3.3...	0.06	Orthogroups_2024-Update
Sopen11g003190	No alias	ABC-2 type transporter	0.02	Orthogroups_2024-Update
evm.model.tig00021489.3	No alias	(at3g21090 : 172.0) ABC-2 type transporter family...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008144	drug binding	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Predicted GO
MF	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	IEP	Predicted GO
MF	GO:0005506	iron ion binding	IEP	Predicted GO
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Predicted GO
BP	GO:0006098	pentose-phosphate shunt	IEP	Predicted GO
BP	GO:0006739	NADP metabolic process	IEP	Predicted GO
BP	GO:0008037	cell recognition	IEP	Predicted GO
MF	GO:0010333	terpene synthase activity	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Predicted GO
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Predicted GO
MF	GO:0016829	lyase activity	IEP	Predicted GO
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Predicted GO
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Predicted GO
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Predicted GO
MF	GO:0020037	heme binding	IEP	Predicted GO
BP	GO:0022414	reproductive process	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0046906	tetrapyrrole binding	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
BP	GO:0048544	recognition of pollen	IEP	Predicted GO
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	Predicted GO
BP	GO:0055114	oxidation-reduction process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR029481	ABC_trans_N	81	144
IPR013525	ABC_2_trans	1160	1373
IPR013525	ABC_2_trans	506	718
IPR013581	PDR_assoc	724	782
IPR003439	ABC_transporter-like	170	352
IPR003439	ABC_transporter-like	862	1014

External Links

No external refs found!

PSME_00010410-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation