Description : (at2g22070 : 627.0) pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G25360.1); Has 47939 Blast hits to 14346 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 98; Fungi - 122; Plants - 46979; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink). & (q76c99|rf1_orysa : 137.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1254.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00010496-RA | |
Cluster | HCCA clusters: Cluster_184 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At5g66520 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.02 | Orthogroups_2024-Update | |
Bradi1g36010 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi4g22520 | No alias | mitochondrial editing factor 22 | 0.03 | Orthogroups_2024-Update | |
Brara.H03086.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Glyma.04G078800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.16G026000 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
HORVU0Hr1G018170.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
HORVU2Hr1G084530.3 | No alias | RNA editing factor *(SLO4) | 0.03 | Orthogroups_2024-Update | |
MA_138676g0010 | No alias | (at3g49170 : 755.0) embryo defective 2261 (EMB2261);... | 0.03 | Orthogroups_2024-Update | |
MA_141731g0010 | No alias | (at4g02750 : 772.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
MA_322292g0010 | No alias | (at4g18750 : 684.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_465411g0010 | No alias | (at4g18750 : 483.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_502206g0010 | No alias | (at1g20230 : 427.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
MA_89214g0010 | No alias | (at1g11290 : 690.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00054674-RA | No alias | (at4g33170 : 289.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
Potri.014G191200 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Sobic.001G444200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.006G153300.2 | No alias | RNA editing factor *(MEF21) | 0.04 | Orthogroups_2024-Update | |
Sobic.007G201400.1 | No alias | RNA editing factor *(DOT4) | 0.03 | Orthogroups_2024-Update | |
Sobic.009G250700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Solyc08g023640 | No alias | Pentatricopeptide repeat-containing protein family (AHRD... | 0.03 | Orthogroups_2024-Update | |
Solyc10g007940 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
Solyc11g064750 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
Sopen03g038830 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen08g024790 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0043461 | proton-transporting ATP synthase complex assembly | IEP | Predicted GO |
BP | GO:0070071 | proton-transporting two-sector ATPase complex assembly | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 135 | 182 |
IPR002885 | Pentatricopeptide_repeat | 337 | 384 |
IPR002885 | Pentatricopeptide_repeat | 237 | 283 |
IPR002885 | Pentatricopeptide_repeat | 438 | 484 |
IPR002885 | Pentatricopeptide_repeat | 102 | 132 |
IPR002885 | Pentatricopeptide_repeat | 512 | 536 |
IPR002885 | Pentatricopeptide_repeat | 210 | 235 |
IPR002885 | Pentatricopeptide_repeat | 412 | 437 |
IPR032867 | DYW_dom | 612 | 735 |
No external refs found! |