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  5. PSME_00010571-RA

PSME_00010571-RA


Description : (q6vaf9|tba4_goshi : 834.0) Tubulin alpha-4 chain (Alpha-4 tubulin) - Gossypium hirsutum (Upland cotton) & (at1g50010 : 829.0) Encodes alpha-2,4 tubulin. TUA2 and TUA4 encode identical proteins.; tubulin alpha-2 chain (TUA2); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress; LOCATED IN: tubulin complex, cytosol, cell wall, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-4 chain (TAIR:AT1G04820.1); Has 22626 Blast hits to 22529 proteins in 4679 species: Archae - 4; Bacteria - 25; Metazoa - 4391; Fungi - 13400; Plants - 1532; Viruses - 0; Other Eukaryotes - 3274 (source: NCBI BLink). & (reliability: 1658.0) & (original description: no original description)


Gene families : OG_42_0000484 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00010571-RA
Cluster HCCA clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
Bradi1g23770 No alias tubulin alpha-5 0.02 Orthogroups_2024-Update
Bradi1g69670 No alias tubulin alpha-5 0.02 Orthogroups_2024-Update
Brara.E01685.1 No alias alpha-Tubulin component *(TUA) of alpha-beta-Tubulin heterodimer 0.05 Orthogroups_2024-Update
Brara.J01612.1 No alias alpha-Tubulin component *(TUA) of alpha-beta-Tubulin heterodimer 0.03 Orthogroups_2024-Update
Brara.J01613.1 No alias alpha-Tubulin component *(TUA) of alpha-beta-Tubulin heterodimer 0.03 Orthogroups_2024-Update
Cre03.g190950 No alias tubulin alpha-2 chain 0.02 Orthogroups_2024-Update
GRMZM2G152466 No alias Tubulin/FtsZ family protein 0.03 Orthogroups_2024-Update
Glyma.04G088500 No alias tubulin alpha-2 chain 0.04 Orthogroups_2024-Update
HORVU1Hr1G081280.1 No alias alpha-Tubulin component *(TUA) of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
LOC_Os03g11970 No alias tubulin/FtsZ domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10102675g0010 No alias (p46259|tba1_pea : 222.0) Tubulin alpha-1 chain - Pisum... 0.03 Orthogroups_2024-Update
MA_184192g0010 No alias (q6vaf9|tba4_goshi : 795.0) Tubulin alpha-4 chain... 0.04 Orthogroups_2024-Update
MA_93486g0010 No alias (at5g19780 : 800.0) Encodes an isoform of alpha tubulin.... 0.03 Orthogroups_2024-Update
Mp1g24530.1 No alias component alpha-Tubulin of alpha-beta-Tubulin heterodimer 0.03 Orthogroups_2024-Update
Mp2g23500.1 No alias component alpha-Tubulin of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
Mp4g00550.1 No alias component alpha-Tubulin of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
Potri.009G085100 No alias tubulin alpha-4 chain 0.04 Orthogroups_2024-Update
Potri.019G036000 No alias tubulin alpha-5 0.03 Orthogroups_2024-Update
Pp1s215_51V6 No alias alpha tubulin 1 0.02 Orthogroups_2024-Update
evm.model.contig_448.6 No alias (q6vag0|tba2_goshi : 681.0) Tubulin alpha-2 chain... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0017003 protein-heme linkage IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 263 392
IPR003008 Tubulin_FtsZ_GTPase 3 213
No external refs found!