1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00010577-RA

PSME_00010577-RA


Description : (at2g22750 : 153.0) basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G37850.1); Has 2965 Blast hits to 2952 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 48; Plants - 2862; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). & (reliability: 306.0) & (original description: no original description)


Gene families : OG_42_0000780 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000780_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00010577-RA
Cluster HCCA clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
Brara.A00113.1 No alias bHLH-type transcription factor 0.02 Orthogroups_2024-Update
Brara.C04094.1 No alias bHLH-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G082343 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
HORVU4Hr1G003210.2 No alias bHLH-type transcription factor 0.02 Orthogroups_2024-Update
MA_82688g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00022405-RA No alias (at4g37850 : 157.0) basic helix-loop-helix (bHLH)... 0.03 Orthogroups_2024-Update
Pp1s31_240V6 No alias dna binding 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 266 311
No external refs found!