Description : (at2g20750 : 194.0) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio); expansin B1 (EXPB1); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B3 (TAIR:AT4G28250.1); Has 2076 Blast hits to 2069 proteins in 143 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 9; Plants - 2024; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). & (q6h676|exb11_orysa : 183.0) Expansin-B11 precursor (OsEXPB11) (Beta-expansin-11) (OsaEXPb1.20) - Oryza sativa (Rice) & (reliability: 388.0) & (original description: no original description)
Gene families : OG_42_0000145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000145_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00010585-RA | |
Cluster | HCCA clusters: Cluster_91 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
GRMZM2G405622 | No alias | expansin B2 | 0.02 | Orthogroups_2024-Update | |
HORVU1Hr1G054250.9 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
PSME_00009595-RA | No alias | (q7x6j9|exb17_orysa : 96.7) Expansin-B17 precursor... | 0.04 | Orthogroups_2024-Update | |
PSME_00014538-RA | No alias | (q6h676|exb11_orysa : 160.0) Expansin-B11 precursor... | 0.06 | Orthogroups_2024-Update | |
PSME_00015392-RA | No alias | (at2g20750 : 239.0) member of BETA-EXPANSINS. Naming... | 0.04 | Orthogroups_2024-Update | |
PSME_00025248-RA | No alias | (q6h676|exb11_orysa : 171.0) Expansin-B11 precursor... | 0.04 | Orthogroups_2024-Update | |
PSME_00039911-RA | No alias | (at2g20750 : 117.0) member of BETA-EXPANSINS. Naming... | 0.05 | Orthogroups_2024-Update | |
PSME_00042510-RA | No alias | (q6h676|exb11_orysa : 200.0) Expansin-B11 precursor... | 0.04 | Orthogroups_2024-Update | |
PSME_00048195-RA | No alias | (q7xt40|exb15_orysa : 117.0) Expansin-B15 precursor... | 0.05 | Orthogroups_2024-Update | |
Seita.7G190800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004126 | cytidine deaminase activity | IEP | Predicted GO |
MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Predicted GO |
BP | GO:0006213 | pyrimidine nucleoside metabolic process | IEP | Predicted GO |
BP | GO:0006216 | cytidine catabolic process | IEP | Predicted GO |
BP | GO:0009164 | nucleoside catabolic process | IEP | Predicted GO |
BP | GO:0009972 | cytidine deamination | IEP | Predicted GO |
MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Predicted GO |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Predicted GO |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Predicted GO |
MF | GO:0019239 | deaminase activity | IEP | Predicted GO |
BP | GO:0034656 | nucleobase-containing small molecule catabolic process | IEP | Predicted GO |
BP | GO:0042454 | ribonucleoside catabolic process | IEP | Predicted GO |
BP | GO:0046087 | cytidine metabolic process | IEP | Predicted GO |
BP | GO:0046131 | pyrimidine ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0046133 | pyrimidine ribonucleoside catabolic process | IEP | Predicted GO |
BP | GO:0046135 | pyrimidine nucleoside catabolic process | IEP | Predicted GO |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0072529 | pyrimidine-containing compound catabolic process | IEP | Predicted GO |
BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | Predicted GO |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Predicted GO |
BP | GO:1901658 | glycosyl compound catabolic process | IEP | Predicted GO |
No external refs found! |