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  5. Solyc02g068630

Solyc02g068630


Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9HF38_POPTR)


Gene families : OG_42_0009208 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009208_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g068630
Cluster HCCA clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
PSME_00052954-RA No alias (at4g13650 : 543.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Sopen02g017800 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004129 cytochrome-c oxidase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006480 N-terminal protein amino acid methylation IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008252 nucleotidase activity IEP Predicted GO
MF GO:0008253 5'-nucleotidase activity IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Predicted GO
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0031365 N-terminal protein amino acid modification IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 381 427
IPR002885 Pentatricopeptide_repeat 482 528
IPR002885 Pentatricopeptide_repeat 179 226
IPR002885 Pentatricopeptide_repeat 79 107
IPR002885 Pentatricopeptide_repeat 57 76
IPR002885 Pentatricopeptide_repeat 621 651
IPR002885 Pentatricopeptide_repeat 556 580
IPR002885 Pentatricopeptide_repeat 456 478
IPR002885 Pentatricopeptide_repeat 280 327
No external refs found!