PSME_00010790-RA

Description : (at5g65360 : 186.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p68428|h32_wheat : 184.0) Histone H3.2 - Triticum aestivum (Wheat) & (reliability: 372.0) & (original description: no original description)

Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00010790-RA
Cluster	HCCA clusters: Cluster_248

Target	Alias	Description	ECC score	Gene Family Method
At5g10390	No alias	Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20]	0.03	Orthogroups_2024-Update
Brara.B00387.1	No alias	histone *(H3)	0.03	Orthogroups_2024-Update
Cre06.g274101	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g275750	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Glyma.08G245000	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Glyma.11G130900	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Glyma.12G055200	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
HORVU6Hr1G007820.1	No alias	histone *(H3)	0.02	Orthogroups_2024-Update
LOC_Os04g34240	No alias	histone H3, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g41080	No alias	histone H3, putative, expressed	0.04	Orthogroups_2024-Update
MA_350032g0010	No alias	(at5g10980 : 266.0) Histone superfamily protein;...	0.05	Orthogroups_2024-Update
PSME_00017144-RA	No alias	(at5g10980 : 144.0) Histone superfamily protein;...	0.04	Orthogroups_2024-Update
Potri.002G028800	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Potri.002G100200	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Sobic.009G178900.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sopen11g005010	No alias	Core histone H2A/H2B/H3/H4	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000159	protein phosphatase type 2A complex	IEP	Predicted GO
MF	GO:0004175	endopeptidase activity	IEP	Predicted GO
MF	GO:0004252	serine-type endopeptidase activity	IEP	Predicted GO
MF	GO:0005215	transporter activity	IEP	Predicted GO
MF	GO:0005506	iron ion binding	IEP	Predicted GO
BP	GO:0006508	proteolysis	IEP	Predicted GO
MF	GO:0008236	serine-type peptidase activity	IEP	Predicted GO
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	Predicted GO
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015267	channel activity	IEP	Predicted GO
BP	GO:0015696	ammonium transport	IEP	Predicted GO
CC	GO:0016020	membrane	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0017171	serine hydrolase activity	IEP	Predicted GO
MF	GO:0019208	phosphatase regulator activity	IEP	Predicted GO
MF	GO:0019888	protein phosphatase regulator activity	IEP	Predicted GO
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predicted GO
MF	GO:0022857	transmembrane transporter activity	IEP	Predicted GO
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Predicted GO
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Predicted GO
MF	GO:0046914	transition metal ion binding	IEP	Predicted GO
CC	GO:1903293	phosphatase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	1	121

External Links

No external refs found!

PSME_00010790-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation