PSME_00010905-RA

Description : (at5g15020 : 593.0) Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).; SIN3-like 2 (SNL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 1 (TAIR:AT3G01320.1). & (reliability: 1186.0) & (original description: no original description)

Gene families : OG_42_0000363 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000363_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00010905-RA
Cluster	HCCA clusters: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g40052	No alias	SIN3-like 4	0.03	Orthogroups_2024-Update
Glyma.02G026700	No alias	SIN3-like 4	0.03	Orthogroups_2024-Update
Glyma.08G292900	No alias	SIN3-like 3	0.03	Orthogroups_2024-Update
Glyma.18G130400	No alias	SIN3-like 4	0.02	Orthogroups_2024-Update
HORVU1Hr1G000290.3	No alias	component *(SNL) of histone deacetylase machineries	0.02	Orthogroups_2024-Update
Sobic.003G101400.1	No alias	component *(SNL) of histone deacetylase machineries	0.03	Orthogroups_2024-Update
Solyc02g067570	No alias	Paired amphipathic helix SIN3-like protein (AHRD V3.3...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Predicted GO
MF	GO:0003951	NAD+ kinase activity	IEP	Predicted GO
MF	GO:0004673	protein histidine kinase activity	IEP	Predicted GO
BP	GO:0006739	NADP metabolic process	IEP	Predicted GO
BP	GO:0006741	NADP biosynthetic process	IEP	Predicted GO
MF	GO:0008408	3'-5' exonuclease activity	IEP	Predicted GO
BP	GO:0009314	response to radiation	IEP	Predicted GO
BP	GO:0009416	response to light stimulus	IEP	Predicted GO
BP	GO:0009581	detection of external stimulus	IEP	Predicted GO
BP	GO:0009582	detection of abiotic stimulus	IEP	Predicted GO
BP	GO:0009583	detection of light stimulus	IEP	Predicted GO
BP	GO:0009584	detection of visible light	IEP	Predicted GO
BP	GO:0009605	response to external stimulus	IEP	Predicted GO
BP	GO:0009628	response to abiotic stimulus	IEP	Predicted GO
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Predicted GO
BP	GO:0018298	protein-chromophore linkage	IEP	Predicted GO
BP	GO:0051606	detection of stimulus	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR013194	HDAC_interact_dom	483	561
IPR003822	PAH	367	411
IPR003822	PAH	58	102
IPR003822	PAH	144	188

External Links

No external refs found!

PSME_00010905-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation