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Description : (at1g11290 : 537.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 147.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1074.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00010951-RA | |
| Cluster | HCCA clusters: Cluster_179 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At5g59200 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | Orthogroups_2024-Update | |
| Brara.C03290.1 | No alias | RNA editing factor *(MEF12) | 0.03 | Orthogroups_2024-Update | |
| Brara.D01648.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.H01279.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| MA_10430355g0010 | No alias | (at1g11290 : 469.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
| MA_114722g0010 | No alias | (at1g11290 : 600.0) Pentatricopeptide Repeat Protein... | 0.06 | Orthogroups_2024-Update | |
| MA_118886g0010 | No alias | (at2g22070 : 615.0) pentatricopeptide (PPR)... | 0.07 | Orthogroups_2024-Update | |
| MA_138676g0010 | No alias | (at3g49170 : 755.0) embryo defective 2261 (EMB2261);... | 0.04 | Orthogroups_2024-Update | |
| MA_16917g0010 | No alias | (at4g13650 : 578.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
| MA_183738g0010 | No alias | (at3g12770 : 617.0) Encodes a pentatricopeptide repeat... | 0.04 | Orthogroups_2024-Update | |
| MA_28051g0010 | No alias | (at1g11290 : 601.0) Pentatricopeptide Repeat Protein... | 0.06 | Orthogroups_2024-Update | |
| MA_286190g0010 | No alias | (at3g63370 : 605.0) Encodes a chloroplast RNA editing... | 0.04 | Orthogroups_2024-Update | |
| MA_2991g0010 | No alias | (at2g27610 : 718.0) Tetratricopeptide repeat (TPR)-like... | 0.06 | Orthogroups_2024-Update | |
| MA_3317g0020 | No alias | (at4g13650 : 607.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
| MA_36655g0010 | No alias | (at4g39530 : 586.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update | |
| MA_381817g0020 | No alias | (at2g22070 : 544.0) pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
| MA_483636g0010 | No alias | (at3g61170 : 684.0) Tetratricopeptide repeat (TPR)-like... | 0.07 | Orthogroups_2024-Update | |
| MA_519985g0010 | No alias | (at3g03580 : 679.0) Tetratricopeptide repeat (TPR)-like... | 0.07 | Orthogroups_2024-Update | |
| MA_66417g0010 | No alias | (at2g22070 : 634.0) pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
| MA_77675g0010 | No alias | (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... | 0.09 | Orthogroups_2024-Update | |
| MA_7977g0010 | No alias | (at4g18750 : 283.0) Encodes a pentatricopeptide (PPR)... | 0.05 | Orthogroups_2024-Update | |
| MA_8319g0010 | No alias | (at4g02750 : 466.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| MA_953793g0020 | No alias | (at4g18750 : 600.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
| MA_97789g0010 | No alias | (at3g26540 : 452.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| MA_98224g0010 | No alias | (at4g13650 : 670.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
| Seita.1G237400.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.6G130100.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.004G025100.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 484 | 507 |
| IPR002885 | Pentatricopeptide_repeat | 311 | 339 |
| IPR002885 | Pentatricopeptide_repeat | 282 | 302 |
| IPR002885 | Pentatricopeptide_repeat | 207 | 254 |
| IPR002885 | Pentatricopeptide_repeat | 4 | 51 |
| IPR002885 | Pentatricopeptide_repeat | 106 | 153 |
| IPR002885 | Pentatricopeptide_repeat | 409 | 456 |
| No external refs found! |