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  5. PSME_00010952-RA

PSME_00010952-RA


Description : (at4g21065 : 218.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33170.1); Has 42394 Blast hits to 14278 proteins in 275 species: Archae - 0; Bacteria - 13; Metazoa - 126; Fungi - 79; Plants - 41597; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink). & (q76c99|rf1_orysa : 87.8) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 436.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00010952-RA

Target Alias Description ECC score Gene Family Method Actions
At2g34400 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.04 Orthogroups_2024-Update
Brara.A02032.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.02G227300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.07 Orthogroups_2024-Update
HORVU5Hr1G066140.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G117720.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os07g02280 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_25515g0010 No alias (at4g13650 : 660.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_43497g0010 No alias (at1g11290 : 666.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
MA_75133g0010 No alias (at1g11290 : 608.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
MA_86628g0010 No alias (at1g11290 : 652.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00006196-RA No alias (at1g11290 : 685.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00018595-RA No alias (at1g11290 : 678.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00026226-RA No alias (at3g46790 : 588.0) Encodes a member of a PCMP (plant... 0.02 Orthogroups_2024-Update
PSME_00030185-RA No alias (at3g57430 : 680.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00044695-RA No alias (at2g22070 : 545.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00050145-RA No alias (at4g13650 : 719.0) Pentatricopeptide repeat (PPR)... 0.01 Orthogroups_2024-Update
Potri.015G034900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Potri.016G051300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.4G168200.1 No alias Unknown function 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 124 171
IPR002885 Pentatricopeptide_repeat 225 265
IPR002885 Pentatricopeptide_repeat 18 69
No external refs found!