PSME_00011041-RA

Description : (at4g25960 : 1546.0) P-glycoprotein 2 (PGP2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 10 (TAIR:AT1G10680.1); Has 857619 Blast hits to 396855 proteins in 4207 species: Archae - 14871; Bacteria - 670687; Metazoa - 17931; Fungi - 12963; Plants - 9451; Viruses - 35; Other Eukaryotes - 131681 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 1033.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 3092.0) & (original description: no original description)

Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00011041-RA
Cluster	HCCA clusters: Cluster_116

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g36897	No alias	ATP binding cassette subfamily B4	0.03	Orthogroups_2024-Update
Bradi2g47400	No alias	ATP binding cassette subfamily B4	0.05	Orthogroups_2024-Update
Brara.F03154.1	No alias	subfamily ABCB transporter	0.05	Orthogroups_2024-Update
Brara.G00386.1	No alias	subfamily ABCB transporter	0.02	Orthogroups_2024-Update
GRMZM2G085236	No alias	ATP binding cassette subfamily B19	0.02	Orthogroups_2024-Update
Glyma.06G139500	No alias	ATP binding cassette subfamily B19	0.03	Orthogroups_2024-Update
Glyma.09G206300	No alias	P-glycoprotein 2	0.03	Orthogroups_2024-Update
Glyma.16G078100	No alias	ABC transporter family protein	0.02	Orthogroups_2024-Update
Glyma.17G041300	No alias	ATP binding cassette subfamily B4	0.05	Orthogroups_2024-Update
Glyma.19G016700	No alias	ABC transporter family protein	0.06	Orthogroups_2024-Update
HORVU3Hr1G065240.1	No alias	subfamily ABCB transporter	0.02	Orthogroups_2024-Update
Kfl00461_0020	kfl00461_0020_v1.1	(at3g28860 : 1090.0) Belongs to the family of...	0.01	Orthogroups_2024-Update
MA_126766g0010	No alias	(at4g25960 : 974.0) P-glycoprotein 2 (PGP2); FUNCTIONS...	0.04	Orthogroups_2024-Update
PSME_00010270-RA	No alias	(at1g02520 : 571.0) P-glycoprotein 11 (PGP11); FUNCTIONS...	0.05	Orthogroups_2024-Update
PSME_00030174-RA	No alias	(at2g47000 : 1538.0) Multidrug resistance ...	0.05	Orthogroups_2024-Update
PSME_00031965-RA	No alias	(q6yuu5\|mdr_orysa : 1268.0) Putative multidrug...	0.02	Orthogroups_2024-Update
PSME_00038380-RA	No alias	(q6yuu5\|mdr_orysa : 1204.0) Putative multidrug...	0.03	Orthogroups_2024-Update
Potri.003G094400	No alias	P-glycoprotein 2	0.02	Orthogroups_2024-Update
Solyc02g087870	No alias	ABC transporter B family protein (AHRD V3.3 *** A0A072U6J8_MEDTR)	0.02	Orthogroups_2024-Update
Solyc04g010310	No alias	ABC transporter B family protein (AHRD V3.3 *** A0A072VSU0_MEDTR)	0.05	Orthogroups_2024-Update
Sopen02g032160	No alias	ABC transporter transmembrane region	0.03	Orthogroups_2024-Update
evm.model.tig00000293.10	No alias	(at2g47000 : 427.0) Multidrug resistance P-glycoprotein...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006814	sodium ion transport	IEP	Predicted GO
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predicted GO
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	398	546
IPR011527	ABC1_TM_dom	701	969
IPR011527	ABC1_TM_dom	56	328
IPR003439	ABC_transporter-like	1037	1185

External Links

No external refs found!

PSME_00011041-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation