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  5. PSME_00011090-RA

PSME_00011090-RA


Description : (at2g27660 : 160.0) Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G44400.1); Has 12415 Blast hits to 4315 proteins in 441 species: Archae - 16; Bacteria - 8002; Metazoa - 1069; Fungi - 491; Plants - 2227; Viruses - 23; Other Eukaryotes - 587 (source: NCBI BLink). & (reliability: 320.0) & (original description: no original description)


Gene families : OG_42_0001343 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001343_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00011090-RA
Cluster HCCA clusters: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
A4A49_18451 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Brara.D02692.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR004146 DC1 242 287
IPR004146 DC1 187 231
IPR004146 DC1 296 344
No external refs found!