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  5. PSME_00011258-RA

PSME_00011258-RA


Description : (o81221|act_goshi : 662.0) Actin - Gossypium hirsutum (Upland cotton) & (at5g09810 : 660.0) Member of Actin gene family.Mutants are defective in germination and root growth.; actin 7 (ACT7); FUNCTIONS IN: protein binding, structural constituent of cytoskeleton; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, nucleolus, cell wall, cytoskeleton, plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 15241 Blast hits to 14839 proteins in 3047 species: Archae - 8; Bacteria - 21; Metazoa - 5732; Fungi - 5247; Plants - 1603; Viruses - 2; Other Eukaryotes - 2628 (source: NCBI BLink). & (reliability: 1208.0) & (original description: no original description)


Gene families : OG_42_0000262 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000262_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00011258-RA
Cluster HCCA clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
178381 No alias actin 7 0.03 Orthogroups_2024-Update
233752 No alias actin 7 0.03 Orthogroups_2024-Update
A4A49_56350 No alias actin 0.02 Orthogroups_2024-Update
At1g49240 No alias Actin-8 [Source:UniProtKB/Swiss-Prot;Acc:Q96293] 0.03 Orthogroups_2024-Update
At3g12110 No alias Actin-11 [Source:UniProtKB/Swiss-Prot;Acc:P53496] 0.02 Orthogroups_2024-Update
At3g46520 No alias Actin-12 [Source:UniProtKB/Swiss-Prot;Acc:P53497] 0.03 Orthogroups_2024-Update
Brara.F01945.1 No alias actin filament protein 0.06 Orthogroups_2024-Update
Brara.J02361.1 No alias actin filament protein 0.03 Orthogroups_2024-Update
Cre03.g176833 No alias actin 2 0.01 Orthogroups_2024-Update
GRMZM2G006765 No alias actin 7 0.03 Orthogroups_2024-Update
GRMZM2G047055 No alias actin-11 0.03 Orthogroups_2024-Update
GRMZM2G126010 No alias actin 7 0.02 Orthogroups_2024-Update
Glyma.03G144800 No alias actin-11 0.03 Orthogroups_2024-Update
Glyma.11G139800 No alias actin-11 0.03 Orthogroups_2024-Update
Kfl00726_0080 kfl00726_0080_v1.... (at3g12110 : 635.0) Encodes an actin that is expressed... 0.01 Orthogroups_2024-Update
MA_93315g0010 No alias (p30164|act1_pea : 528.0) Actin-1 - Pisum sativum... 0.03 Orthogroups_2024-Update
PSME_00050983-RA No alias (p17299|act3_orysa : 573.0) Actin-3 - Oryza sativa... 0.05 Orthogroups_2024-Update
Seita.3G227300.1 No alias actin filament protein 0.02 Orthogroups_2024-Update
Sobic.001G112600.1 No alias actin filament protein 0.03 Orthogroups_2024-Update
Sobic.009G006100.1 No alias actin filament protein 0.02 Orthogroups_2024-Update
Solyc03g078400 No alias actin 0.03 Orthogroups_2024-Update
Solyc04g011500 No alias actin 0.02 Orthogroups_2024-Update
Solyc10g080500 No alias actin 0.03 Orthogroups_2024-Update
Sopen03g021220 No alias Actin 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004000 Actin 19 378
No external refs found!