1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00011353-RA

PSME_00011353-RA


Description : (at2g40610 : 387.0) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin A8 (EXPA8); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A2 (TAIR:AT5G05290.1); Has 2297 Blast hits to 2294 proteins in 186 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 45; Plants - 2187; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). & (q40636|expa2_orysa : 375.0) Expansin-A2 precursor (OsEXPA2) (Alpha-expansin-2) (OsEXP2) (OsaEXPa1.23) (RiExB) (RiExC) - Oryza sativa (Rice) & (reliability: 774.0) & (original description: no original description)


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00011353-RA
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AC234190.1_FG001 No alias expansin A17 0.03 Orthogroups_2024-Update
Glyma.07G229000 No alias expansin A15 0.03 Orthogroups_2024-Update
MA_40314g0010 No alias (q40636|expa2_orysa : 396.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
PSME_00039952-RA No alias (at5g05290 : 224.0) Encodes an expansin. Naming... 0.04 Orthogroups_2024-Update
PSME_00040124-RA No alias (q40636|expa2_orysa : 387.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
PSME_00051669-RA No alias (at2g40610 : 425.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Potri.016G135200 No alias expansin A8 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 79 164
IPR007117 Expansin_CBD 175 252
No external refs found!