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  5. PSME_00011367-RA

PSME_00011367-RA


Description : (at1g60390 : 377.0) polygalacturonase 1 (PG1); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: polygalacturonase 2 (TAIR:AT1G70370.2); Has 3094 Blast hits to 2364 proteins in 384 species: Archae - 8; Bacteria - 697; Metazoa - 473; Fungi - 328; Plants - 614; Viruses - 4; Other Eukaryotes - 970 (source: NCBI BLink). & (reliability: 754.0) & (original description: no original description)


Gene families : OG_42_0001780 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001780_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00011367-RA
Cluster HCCA clusters: Cluster_533

Target Alias Description ECC score Gene Family Method Actions
Glyma.18G138200 No alias polygalacturonase 2 0.02 Orthogroups_2024-Update
MA_10430057g0010 No alias (at1g70370 : 422.0) polygalacturonase 2 (PG2); FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00022036-RA No alias (at1g60390 : 471.0) polygalacturonase 1 (PG1); FUNCTIONS... 0.07 Orthogroups_2024-Update
PSME_00032046-RA No alias (at1g60390 : 380.0) polygalacturonase 1 (PG1); FUNCTIONS... 0.02 Orthogroups_2024-Update
Potri.008G190000 No alias polygalacturonase 2 0.02 Orthogroups_2024-Update
Potri.012G079200 No alias polygalacturonase 2 0.03 Orthogroups_2024-Update
Sobic.007G116800.1 No alias regulatory protein of polygalacturonase activity 0.06 Orthogroups_2024-Update
Solyc05g005540 No alias Polygalacturonase non-catalytic subunit AroGP3 (AHRD... 0.05 Orthogroups_2024-Update
Sopen03g033340 No alias BURP domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR004873 BURP_dom 375 493
IPR004873 BURP_dom 516 547
No external refs found!