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  5. PSME_00011396-RA

PSME_00011396-RA


Description : (at2g32070 : 308.0) Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G80780.2); Has 941 Blast hits to 931 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 149; Plants - 385; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). & (reliability: 616.0) & (original description: no original description)


Gene families : OG_42_0001501 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00011396-RA
Cluster HCCA clusters: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G071059 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.02 Orthogroups_2024-Update
HORVU7Hr1G067520.3 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 Orthogroups_2024-Update
Potri.003G181100 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.02 Orthogroups_2024-Update
Potri.006G187200 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.02 Orthogroups_2024-Update
Potri.006G262500 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.03 Orthogroups_2024-Update
Potri.018G020900 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.02 Orthogroups_2024-Update
Pp1s85_101V6 No alias ccr4-associated factor 0.05 Orthogroups_2024-Update
evm.model.contig_516.10 No alias (at1g80780 : 280.0) Polynucleotidyl transferase,... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 184 268
No external refs found!