PSME_00011512-RA

Description : (at2g28480 : 233.0) RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT4G13070.1); Has 308 Blast hits to 279 proteins in 29 species: Archae - 0; Bacteria - 5; Metazoa - 22; Fungi - 0; Plants - 268; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). & (reliability: 466.0) & (original description: no original description)

Gene families : OG_42_0001255 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001255_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00011512-RA
Cluster	HCCA clusters: Cluster_105

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g42940	No alias	RNA-binding CRS1 / YhbY (CRM) domain protein	0.05	Orthogroups_2024-Update
Glyma.12G051900	No alias	RNA-binding CRS1 / YhbY (CRM) domain protein	0.02	Orthogroups_2024-Update
Pp1s55_63V6	No alias	unknow protein	0.04	Orthogroups_2024-Update
Seita.4G132500.1	No alias	splicing factor *(CFM6/7)	0.03	Orthogroups_2024-Update
Sopen12g006070	No alias	CRS1 / YhbY (CRM) domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005643	nuclear pore	IEP	Predicted GO
BP	GO:0006413	translational initiation	IEP	Predicted GO
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0046914	transition metal ion binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001890	RNA-binding_CRM	298	381

External Links

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PSME_00011512-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation