1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00011575-RA

PSME_00011575-RA


Description : (at2g14960 : 234.0) encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin.; GH3.1; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G37390.1); Has 1628 Blast hits to 1412 proteins in 230 species: Archae - 1; Bacteria - 595; Metazoa - 55; Fungi - 2; Plants - 676; Viruses - 0; Other Eukaryotes - 299 (source: NCBI BLink). & (q7xin9|gh38_orysa : 218.0) Probable indole-3-acetic acid-amido synthetase GH3.8 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 8) (OsGH3-8) - Oryza sativa (Rice) & (reliability: 468.0) & (original description: no original description)


Gene families : OG_42_0000128 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00011575-RA
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
Bradi1g23840 No alias Auxin-responsive GH3 family protein 0.03 Orthogroups_2024-Update
Glyma.U031110 No alias Auxin-responsive GH3 family protein 0.03 Orthogroups_2024-Update
PSME_00030829-RA No alias (at5g54510 : 861.0) Encodes an IAA-amido synthase that... 0.05 Orthogroups_2024-Update
Seita.5G342900.1 No alias indole-3-acetic acid-amido synthetase *(GH3) 0.07 Orthogroups_2024-Update
Sobic.002G361500.1 No alias indole-3-acetic acid-amido synthetase *(GH3) 0.04 Orthogroups_2024-Update
Sobic.009G187700.1 No alias indole-3-acetic acid-amido synthetase *(GH3) 0.03 Orthogroups_2024-Update
Sobic.009G249900.3 No alias jasmonoyl-amino acid synthetase *(JAR1) 0.03 Orthogroups_2024-Update
Solyc01g107390 No alias GH3 (AHRD V3.3 *** E2FHL1_9ROSI) 0.03 Orthogroups_2024-Update
Solyc02g092820 No alias IAA-amido synthetase 3-4 0.03 Orthogroups_2024-Update
Solyc10g006630 No alias Auxin-responsive GH3 family protein (AHRD V3.3 *** AT5G54510.1) 0.03 Orthogroups_2024-Update
Solyc10g011660 No alias Auxin-responsive GH3 family protein (AHRD V3.3 *** AT2G46370.4) 0.03 Orthogroups_2024-Update
Sopen07g028470 No alias GH3 auxin-responsive promoter 0.02 Orthogroups_2024-Update
Sopen07g031970 No alias GH3 auxin-responsive promoter 0.04 Orthogroups_2024-Update
Sopen10g004340 No alias GH3 auxin-responsive promoter 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004993 GH3 21 171
No external refs found!