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  5. PSME_00011913-RA

PSME_00011913-RA


Description : (at3g51430 : 162.0) Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.; YELLOW-LEAF-SPECIFIC GENE 2 (YLS2); CONTAINS InterPro DOMAIN/s: Strictosidine synthase (InterPro:IPR004141), Strictosidine synthase, conserved region (InterPro:IPR018119), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT3G51440.1). & (reliability: 324.0) & (original description: no original description)


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00011913-RA

Target Alias Description ECC score Gene Family Method Actions
A4A49_18116 No alias ring-h2 finger protein atl78 0.01 Orthogroups_2024-Update
A4A49_30512 No alias ring-h2 finger protein atl54 0.02 Orthogroups_2024-Update
A4A49_35950 No alias e3 ubiquitin-protein ligase atl41 0.02 Orthogroups_2024-Update
A4A49_36505 No alias e3 ubiquitin-protein ligase atl6 0.01 Orthogroups_2024-Update
A4A49_40065 No alias ring-h2 finger protein atl70 0.01 Orthogroups_2024-Update
At2g27940 No alias RING-H2 finger protein ATL57... 0.03 Orthogroups_2024-Update
Bradi2g55990 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Bradi3g09395 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Bradi3g56160 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G004519 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G041549 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G075782 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G460958 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G478553 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G175400 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G092100 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G108500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G178400 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G194600 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G069670.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G015780.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU4Hr1G004390.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G079930.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU6Hr1G051480.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU6Hr1G051510.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
LOC_Os01g11460 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os02g15010 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g46100 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g58540 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g34230 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g02220 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_101154g0010 No alias (at3g16720 : 130.0) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
MA_10429624g0010 No alias (at3g05200 : 133.0) Encodes a putative RING-H2 zinc... 0.04 Orthogroups_2024-Update
MA_107765g0010 No alias (at1g72200 : 140.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_12352g0010 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
MA_1252g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_19072g0010 No alias (at5g17600 : 137.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_26001g0020 No alias (at1g72310 : 117.0) Encodes a putative RING-H2 zinc... 0.01 Orthogroups_2024-Update
MA_2679g0010 No alias (at3g16720 : 111.0) RING-H2 protein induced after... 0.01 Orthogroups_2024-Update
MA_280399g0010 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
MA_31462g0010 No alias (at1g49220 : 101.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_634100g0010 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
MA_77628g0010 No alias (at1g72310 : 116.0) Encodes a putative RING-H2 zinc... 0.02 Orthogroups_2024-Update
MA_80729g0030 No alias (at3g16720 : 139.0) RING-H2 protein induced after... 0.01 Orthogroups_2024-Update
MA_85088g0010 No alias (at1g49230 : 131.0) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update
MA_8693914g0010 No alias (at5g05280 : 130.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00024216-RA No alias (at1g49230 : 130.0) RING/U-box superfamily protein;... 0.05 Orthogroups_2024-Update
PSME_00033978-RA No alias (at5g01880 : 110.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00034763-RA No alias (at5g05280 : 85.1) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update
Potri.002G101800 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.005G113200 No alias receptor homology region transmembrane domain ring H2... 0.01 Orthogroups_2024-Update
Potri.010G010500 No alias TOXICOS EN LEVADURA 2 0.02 Orthogroups_2024-Update
Potri.011G063100 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.011G119900 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.016G067900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.019G010500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.T081800 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Seita.1G197400.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.1G197600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Seita.2G238400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.5G023000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G410900.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.002G277800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G187600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.010G158500.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Solyc04g074820 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen10g005680 No alias Ring finger domain 0.05 Orthogroups_2024-Update
Sopen10g032300 No alias Ring finger domain 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 122 157
No external refs found!