PSME_00011921-RA

Description : (at4g03210 : 296.0) encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.; xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p93349|xth_tobac : 259.0) Probable xyloglucan endotransglucosylase/hydrolase protein precursor (EC 2.4.1.207) - Nicotiana tabacum (Common tobacco) & (reliability: 592.0) & (original description: no original description)

Gene families : OG_42_0000032 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000032_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00011921-RA

Target	Alias	Description	ECC score	Gene Family Method
140273	No alias	xyloglucan endotransglucosylase/hydrolase 6	0.04	Orthogroups_2024-Update
A4A49_37940	No alias	xyloglucan endotransglucosylasehydrolase protein 9	0.02	Orthogroups_2024-Update
Brara.A00715.1	No alias	EC_2.4 glycosyltransferase	0.03	Orthogroups_2024-Update
GRMZM2G004699	No alias	xyloglucan endotransglucosylase/hydrolase 5	0.02	Orthogroups_2024-Update
GRMZM2G112619	No alias	xyloglucan endotransglucosylase/hydrolase 26	0.02	Orthogroups_2024-Update
Glyma.05G109600	No alias	xyloglucan endotransglucosylase/hydrolase 6	0.03	Orthogroups_2024-Update
Glyma.08G035900	No alias	xyloglucan endotransglucosylase/hydrolase 26	0.04	Orthogroups_2024-Update
Glyma.10G054200	No alias	xyloglucan endotransglucosylase/hydrolase 32	0.04	Orthogroups_2024-Update
Glyma.13G094900	No alias	Xyloglucan endotransglucosylase/hydrolase family protein	0.03	Orthogroups_2024-Update
Glyma.13G304400	No alias	xyloglucan endotransglucosylase/hydrolase 9	0.03	Orthogroups_2024-Update
Glyma.16G150300	No alias	xyloglucan endotransglucosylase/hydrolase 5	0.02	Orthogroups_2024-Update
LOC_Os06g48160	No alias	glycosyl hydrolases family 16, putative, expressed	0.02	Orthogroups_2024-Update
Mp2g17820.1	No alias	Enzyme classification.EC_2 transferases.EC_2.4...	0.01	Orthogroups_2024-Update
Mp2g21490.1	No alias	Enzyme classification.EC_2 transferases.EC_2.4...	0.02	Orthogroups_2024-Update
Mp2g21520.1	No alias	Enzyme classification.EC_2 transferases.EC_2.4...	0.02	Orthogroups_2024-Update
Mp2g22860.1	No alias	Enzyme classification.EC_2 transferases.EC_2.4...	0.01	Orthogroups_2024-Update
Mp3g22120.1	No alias	Enzyme classification.EC_2 transferases.EC_2.4...	0.04	Orthogroups_2024-Update
Mp4g01200.1	No alias	Enzyme classification.EC_2 transferases.EC_2.4...	0.01	Orthogroups_2024-Update
PSME_00001200-RA	No alias	(at4g03210 : 352.0) encodes a member of xyloglucan...	0.02	Orthogroups_2024-Update
PSME_00017708-RA	No alias	(at4g03210 : 291.0) encodes a member of xyloglucan...	0.03	Orthogroups_2024-Update
PSME_00039728-RA	No alias	(q39857\|xth_soybn : 318.0) Probable xyloglucan...	0.02	Orthogroups_2024-Update
Pp1s122_57V6	No alias	brassinosteroid-regulated protein bru1	0.02	Orthogroups_2024-Update
Pp1s309_38V6	No alias	xyloglucan endotransglycosylase	0.01	Orthogroups_2024-Update
Pp1s410_28V6	No alias	Probable xyloglucan endotransglucosylase/hydrolase...	0.02	Orthogroups_2024-Update
Pp1s4_32V6	No alias	xyloglucan endotransglucosylase hydrolase protein a	0.01	Orthogroups_2024-Update
Seita.2G313800.1	No alias	xyloglucan endotransglucosylase/hydrolase *(XTH) &...	0.02	Orthogroups_2024-Update
Solyc07g052980	No alias	xyloglucan endotransglycosylase/hydrolase 16	0.03	Orthogroups_2024-Update
Solyc12g098610	No alias	Xyloglucan endotransglucosylase/hydrolase (AHRD V3.3 ***...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IEA	InterProScan predictions
BP	GO:0005975	carbohydrate metabolic process	IEA	InterProScan predictions
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	transferase activity, transferring glycosyl groups	None	Extended
MF	GO:0016758	transferase activity, transferring hexosyl groups	None	Extended
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
CC	GO:0048046	apoplast	IEA	InterProScan predictions
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0003774	motor activity	IEP	Predicted GO
MF	GO:0003777	microtubule motor activity	IEP	Predicted GO
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	Predicted GO
BP	GO:0006928	movement of cell or subcellular component	IEP	Predicted GO
BP	GO:0007017	microtubule-based process	IEP	Predicted GO
BP	GO:0007018	microtubule-based movement	IEP	Predicted GO
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Predicted GO
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010713	XET_C	221	263
IPR000757	GH16	14	189

External Links

No external refs found!

PSME_00011921-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation