Description : (at4g02750 : 618.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 111.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1236.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00012002-RA | |
Cluster | HCCA clusters: Cluster_127 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
102435 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Brara.A03196.1 | No alias | RNA editing factor *(CREF3) | 0.02 | Orthogroups_2024-Update | |
Glyma.03G227900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.04G129100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.12G005600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.20G200067 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Orthogroups_2024-Update | |
LOC_Os03g58100 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
PSME_00003038-RA | No alias | (at1g11290 : 364.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
Potri.010G086200 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.013G044700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.015G138000 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Seita.9G032700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.9G548100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.001G149100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.001G151300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G292300.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.003G047400.1 | No alias | RNA editing factor *(OTP81) | 0.02 | Orthogroups_2024-Update | |
Sobic.003G142400.2 | No alias | RNA editing factor *(PGN) | 0.04 | Orthogroups_2024-Update | |
Sobic.004G141600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.008G009000.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.010G067000.1 | No alias | RNA editing factor *(MEF29) | 0.03 | Orthogroups_2024-Update | |
Sopen01g002910 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen01g041280 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen02g033370 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen02g039140 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen03g002990 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen03g024500 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen03g028590 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen06g022100 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen06g035950 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen09g033130 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen11g029050 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity | IEP | Predicted GO |
MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
BP | GO:0001932 | regulation of protein phosphorylation | IEP | Predicted GO |
MF | GO:0005525 | GTP binding | IEP | Predicted GO |
MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Predicted GO |
MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Predicted GO |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
BP | GO:0019220 | regulation of phosphate metabolic process | IEP | Predicted GO |
MF | GO:0019900 | kinase binding | IEP | Predicted GO |
MF | GO:0019901 | protein kinase binding | IEP | Predicted GO |
BP | GO:0031399 | regulation of protein modification process | IEP | Predicted GO |
BP | GO:0032268 | regulation of cellular protein metabolic process | IEP | Predicted GO |
MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
MF | GO:0033897 | ribonuclease T2 activity | IEP | Predicted GO |
BP | GO:0042325 | regulation of phosphorylation | IEP | Predicted GO |
BP | GO:0043549 | regulation of kinase activity | IEP | Predicted GO |
BP | GO:0045859 | regulation of protein kinase activity | IEP | Predicted GO |
BP | GO:0050790 | regulation of catalytic activity | IEP | Predicted GO |
BP | GO:0051174 | regulation of phosphorus metabolic process | IEP | Predicted GO |
BP | GO:0051246 | regulation of protein metabolic process | IEP | Predicted GO |
BP | GO:0051338 | regulation of transferase activity | IEP | Predicted GO |
BP | GO:0051726 | regulation of cell cycle | IEP | Predicted GO |
BP | GO:0065009 | regulation of molecular function | IEP | Predicted GO |
BP | GO:0071900 | regulation of protein serine/threonine kinase activity | IEP | Predicted GO |
BP | GO:1904029 | regulation of cyclin-dependent protein kinase activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 85 | 108 |
IPR002885 | Pentatricopeptide_repeat | 310 | 333 |
IPR002885 | Pentatricopeptide_repeat | 141 | 171 |
IPR002885 | Pentatricopeptide_repeat | 410 | 434 |
IPR002885 | Pentatricopeptide_repeat | 110 | 140 |
IPR002885 | Pentatricopeptide_repeat | 203 | 231 |
IPR002885 | Pentatricopeptide_repeat | 172 | 202 |
IPR002885 | Pentatricopeptide_repeat | 232 | 281 |
IPR002885 | Pentatricopeptide_repeat | 335 | 383 |
IPR032867 | DYW_dom | 509 | 633 |
No external refs found! |