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  5. PSME_00012028-RA

PSME_00012028-RA


Description : (at3g04350 : 558.0) Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT5G18490.1); Has 389 Blast hits to 369 proteins in 101 species: Archae - 0; Bacteria - 21; Metazoa - 15; Fungi - 143; Plants - 203; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). & (reliability: 1116.0) & (original description: no original description)


Gene families : OG_42_0000918 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000918_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00012028-RA
Cluster HCCA clusters: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
Glyma.01G229066 No alias Plant protein of unknown function (DUF946) 0.02 Orthogroups_2024-Update
Glyma.15G267200 No alias Plant protein of unknown function (DUF946) 0.03 Orthogroups_2024-Update
Pp1s199_148V6 No alias T6K12.3; expressed protein [Arabidopsis thaliana] 0.05 Orthogroups_2024-Update
Sobic.002G351300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc08g075790 No alias Vacuolar sorting-associated protein 62 (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR009291 Vps62 6 559
No external refs found!