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  5. PSME_00012029-RA

PSME_00012029-RA


Description : (at5g41170 : 136.0) Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G16710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 117.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 272.0) & (original description: no original description)


Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00012029-RA
Cluster HCCA clusters: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
441332 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
MA_10425801g0010 No alias (at3g22470 : 379.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_12730g0010 No alias (at5g55840 : 459.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_4589g0010 No alias (at3g22470 : 368.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
MA_65832g0010 No alias (at5g39710 : 294.0) EMBRYO DEFECTIVE 2745 (EMB2745);... 0.04 Orthogroups_2024-Update
MA_68479g0010 No alias (at1g62910 : 405.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
MA_78481g0010 No alias (at1g63130 : 360.0) Transacting siRNA generating locus.... 0.07 Orthogroups_2024-Update
MA_854602g0010 No alias (at1g63080 : 271.0) Transacting siRNA generating locus.... 0.05 Orthogroups_2024-Update
MA_959553g0010 No alias (at3g22470 : 392.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0030001 metal ion transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 438 487
IPR002885 Pentatricopeptide_repeat 378 410
IPR002885 Pentatricopeptide_repeat 504 521
No external refs found!