Description : (at1g30330 : 662.0) Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.; auxin response factor 6 (ARF6); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, response to auxin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 8 (TAIR:AT5G37020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1324.0) & (original description: no original description)
Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00012134-RA | |
Cluster | HCCA clusters: Cluster_122 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Glyma.14G217700 | No alias | Transcriptional factor B3 family protein /... | 0.03 | Orthogroups_2024-Update | |
Glyma.15G091000 | No alias | auxin response factor 8 | 0.03 | Orthogroups_2024-Update | |
LOC_Os06g09660 | No alias | auxin response factor, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_92651g0010 | No alias | (at5g62000 : 742.0) Encodes an auxin response factor.... | 0.03 | Orthogroups_2024-Update | |
Mp4g11820.1 | No alias | transcription factor (ARF) | 0.02 | Orthogroups_2024-Update | |
Potri.011G091900 | No alias | auxin response factor 6 | 0.02 | Orthogroups_2024-Update | |
Pp1s119_32V6 | No alias | auxin response | 0.02 | Orthogroups_2024-Update | |
Solyc07g043620 | No alias | Auxin Response Factor 6B | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
CC | GO:0005634 | nucleus | IEA | InterProScan predictions |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | InterProScan predictions |
BP | GO:0009725 | response to hormone | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003779 | actin binding | IEP | Predicted GO |
MF | GO:0003950 | NAD+ ADP-ribosyltransferase activity | IEP | Predicted GO |
MF | GO:0004386 | helicase activity | IEP | Predicted GO |
MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Predicted GO |
MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Predicted GO |
MF | GO:0005515 | protein binding | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006338 | chromatin remodeling | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006650 | glycerophospholipid metabolic process | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006914 | autophagy | IEP | Predicted GO |
BP | GO:0007010 | cytoskeleton organization | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
MF | GO:0008170 | N-methyltransferase activity | IEP | Predicted GO |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Predicted GO |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Predicted GO |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016307 | phosphatidylinositol phosphate kinase activity | IEP | Predicted GO |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Predicted GO |
MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
MF | GO:0031491 | nucleosome binding | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
MF | GO:0042393 | histone binding | IEP | Predicted GO |
BP | GO:0043044 | ATP-dependent chromatin remodeling | IEP | Predicted GO |
MF | GO:0043531 | ADP binding | IEP | Predicted GO |
BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
MF | GO:0044877 | protein-containing complex binding | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | Predicted GO |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Predicted GO |
BP | GO:0061919 | process utilizing autophagic mechanism | IEP | Predicted GO |
MF | GO:0070566 | adenylyltransferase activity | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
CC | GO:1902554 | serine/threonine protein kinase complex | IEP | Predicted GO |
CC | GO:1902911 | protein kinase complex | IEP | Predicted GO |
CC | GO:1990316 | Atg1/ULK1 kinase complex | IEP | Predicted GO |
No external refs found! |