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  5. PSME_00012229-RA

PSME_00012229-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000142 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00012229-RA
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
At2g38540 No alias Non-specific lipid-transfer protein... 0.04 Orthogroups_2024-Update
Brara.C04371.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.D02349.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.01G130000 No alias lipid transfer protein 3 0.02 Orthogroups_2024-Update
MA_189520g0010 No alias (at2g18370 : 86.3) Predicted to encode a PR... 0.03 Orthogroups_2024-Update
PSME_00024120-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Solyc10g075100 No alias Non-specific lipid-transfer protein (AHRD V3.3 *** Q4A1N1_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
BP GO:0007033 vacuole organization IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:1905037 autophagosome organization IEP Predicted GO
InterPro domains Description Start Stop
IPR016140 Bifunc_inhib/LTP/seed_store 30 103
No external refs found!