1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00012259-RA

PSME_00012259-RA


Description : (at1g62300 : 138.0) Encodes a transcription factor WRKY6. Regulates Phosphate1 (Pho1) expression in response to low phosphate (Pi) stress.; WRKY6; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT4G04450.1); Has 3824 Blast hits to 3363 proteins in 295 species: Archae - 0; Bacteria - 33; Metazoa - 119; Fungi - 43; Plants - 3509; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). & (reliability: 276.0) & (original description: no original description)


Gene families : OG_42_0000005 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00012259-RA
Cluster HCCA clusters: Cluster_303

Target Alias Description ECC score Gene Family Method Actions
29146 No alias WRKY family transcription factor 0.05 Orthogroups_2024-Update
81371 No alias WRKY DNA-binding protein 9 0.02 Orthogroups_2024-Update
A4A49_13674 No alias putative wrky transcription factor 48 0.03 Orthogroups_2024-Update
A4A49_32819 No alias putative wrky transcription factor 31 0.02 Orthogroups_2024-Update
At5g49520 No alias Probable WRKY transcription factor 48... 0.03 Orthogroups_2024-Update
Bradi1g05346 No alias WRKY DNA-binding protein 39 0.03 Orthogroups_2024-Update
Bradi2g22241 No alias WRKY DNA-binding protein 54 0.02 Orthogroups_2024-Update
Bradi4g19060 No alias WRKY DNA-binding protein 75 0.03 Orthogroups_2024-Update
Brara.A00597.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Brara.C00649.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Brara.C01290.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Brara.C04691.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Brara.D00225.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.D02112.1 No alias WRKY-type transcription factor 0.01 Orthogroups_2024-Update
Brara.E00458.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Brara.F03624.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Brara.G02484.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Brara.H01956.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I00100.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I02789.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Brara.J01061.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Brara.J01462.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Brara.K00721.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G012724 No alias WRKY DNA-binding protein 33 0.03 Orthogroups_2024-Update
GRMZM2G025895 No alias WRKY family transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G111711 No alias WRKY DNA-binding protein 40 0.03 Orthogroups_2024-Update
GRMZM2G125653 No alias WRKY DNA-binding protein 40 0.02 Orthogroups_2024-Update
Glyma.01G128100 No alias WRKY DNA-binding protein 33 0.03 Orthogroups_2024-Update
Glyma.03G042700 No alias WRKY DNA-binding protein 33 0.03 Orthogroups_2024-Update
Glyma.03G220800 No alias WRKY DNA-binding protein 23 0.03 Orthogroups_2024-Update
Glyma.09G240000 No alias WRKY DNA-binding protein 72 0.03 Orthogroups_2024-Update
Glyma.10G138300 No alias WRKY family transcription factor 0.02 Orthogroups_2024-Update
Glyma.14G028900 No alias WRKY DNA-binding protein 28 0.02 Orthogroups_2024-Update
Glyma.14G185800 No alias WRKY DNA-binding protein 70 0.02 Orthogroups_2024-Update
Glyma.16G054400 No alias WRKY DNA-binding protein 75 0.02 Orthogroups_2024-Update
Glyma.19G177400 No alias WRKY family transcription factor family protein 0.02 Orthogroups_2024-Update
HORVU0Hr1G001430.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
HORVU1Hr1G090130.3 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
HORVU3Hr1G069320.3 No alias WRKY-type transcription factor 0.04 Orthogroups_2024-Update
HORVU3Hr1G071750.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
LOC_Os01g08710 No alias WRKY102, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g14440 No alias WRKY1, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g53040 No alias WRKY14, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g62514 No alias WRKY56, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g29660 No alias WRKY69, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g30400 No alias WRKY90, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g45920 No alias WRKY63, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g02420 No alias WRKY97, expressed 0.02 Orthogroups_2024-Update
MA_103616g0010 No alias (at4g22070 : 256.0) member of WRKY Transcription Factor;... 0.04 Orthogroups_2024-Update
MA_11072g0010 No alias (at1g68150 : 82.4) member of WRKY Transcription Factor;... 0.03 Orthogroups_2024-Update
MA_114377g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_134559g0010 No alias (at1g62300 : 80.9) Encodes a transcription factor WRKY6.... 0.03 Orthogroups_2024-Update
MA_17107g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_179641g0010 No alias (at1g29860 : 118.0) member of WRKY Transcription Factor;... 0.04 Orthogroups_2024-Update
MA_23415g0010 No alias (at5g26170 : 117.0) member of WRKY Transcription Factor;... 0.03 Orthogroups_2024-Update
MA_381058g0010 No alias (at1g68150 : 80.5) member of WRKY Transcription Factor;... 0.04 Orthogroups_2024-Update
MA_46529g0010 No alias (at1g62300 : 139.0) Encodes a transcription factor... 0.04 Orthogroups_2024-Update
MA_6177g0010 No alias (at4g11070 : 114.0) member of WRKY Transcription Factor;... 0.03 Orthogroups_2024-Update
MA_91468g0010 No alias (at4g01720 : 124.0) member of WRKY Transcription Factor;... 0.04 Orthogroups_2024-Update
MA_934202g0010 No alias (at1g62300 : 149.0) Encodes a transcription factor... 0.04 Orthogroups_2024-Update
PSME_00001979-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00035861-RA No alias (at3g01970 : 109.0) member of WRKY Transcription Factor;... 0.02 Orthogroups_2024-Update
PSME_00040311-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00047222-RA No alias (at4g04450 : 178.0) member of WRKY Transcription Factor;... 0.05 Orthogroups_2024-Update
Potri.001G092900 No alias WRKY family transcription factor 0.03 Orthogroups_2024-Update
Potri.002G193000 No alias WRKY DNA-binding protein 23 0.03 Orthogroups_2024-Update
Potri.002G228400 No alias WRKY family transcription factor 0.04 Orthogroups_2024-Update
Potri.003G138600 No alias WRKY family transcription factor 0.03 Orthogroups_2024-Update
Potri.004G007500 No alias WRKY family transcription factor 0.03 Orthogroups_2024-Update
Potri.004G072000 No alias WRKY DNA-binding protein 27 0.03 Orthogroups_2024-Update
Potri.006G105300 No alias WRKY DNA-binding protein 33 0.03 Orthogroups_2024-Update
Potri.011G007800 No alias WRKY family transcription factor 0.03 Orthogroups_2024-Update
Potri.015G099200 No alias WRKY DNA-binding protein 75 0.03 Orthogroups_2024-Update
Potri.016G128300 No alias WRKY DNA-binding protein 33 0.03 Orthogroups_2024-Update
Potri.016G137900 No alias WRKY DNA-binding protein 70 0.04 Orthogroups_2024-Update
Pp1s159_105V6 No alias wrky11 - superfamily of tfs having wrky and zinc finger domains 0.03 Orthogroups_2024-Update
Pp1s35_336V6 No alias wrky transcription 0.03 Orthogroups_2024-Update
Pp1s39_217V6 No alias wrky transcription 0.02 Orthogroups_2024-Update
Pp1s5_354V6 No alias wrky transcription 0.04 Orthogroups_2024-Update
Seita.1G062100.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Seita.3G108500.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Seita.3G139400.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Seita.3G206900.1 No alias transcription factor *(WRKY33) & WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Seita.4G197100.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Seita.5G001000.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Seita.5G132700.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Seita.5G256700.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Seita.5G294500.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Seita.6G132800.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Seita.7G301900.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Seita.7G302000.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Seita.7G302500.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Seita.8G123100.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Seita.9G084400.1 No alias WRKY-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.002G174200.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G174300.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.003G000600.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.003G138400.1 No alias WRKY-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.003G276000.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.003G285500.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.003G341100.1 No alias transcription factor *(WRKY33) & WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.004G065900.1 No alias WRKY-type transcription factor 0.05 Orthogroups_2024-Update
Sobic.005G013500.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.005G117400.2 No alias WRKY-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.007G118301.1 No alias WRKY-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.009G068900.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.009G100500.1 No alias transcription factor *(WRKY33) & WRKY-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.009G171600.1 No alias transcription factor *(WRKY33) & WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.009G238200.1 No alias WRKY-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.010G209100.1 No alias WRKY-type transcription factor 0.02 Orthogroups_2024-Update
Solyc04g051690 No alias WRKY transcription factor 51 0.03 Orthogroups_2024-Update
Solyc04g072070 No alias WRKY transcription factor 55 0.03 Orthogroups_2024-Update
Solyc06g070990 No alias WRKY transcription factor 74 0.02 Orthogroups_2024-Update
Solyc08g067360 No alias WRKY transcription factor 45 0.03 Orthogroups_2024-Update
Sopen01g031040 No alias WRKY DNA -binding domain 0.03 Orthogroups_2024-Update
Sopen07g024390 No alias WRKY DNA -binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
MF GO:0043565 sequence-specific DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003657 WRKY_dom 221 277
No external refs found!