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  5. PSME_00012292-RA

PSME_00012292-RA


Description : (at2g29940 : 1536.0) pleiotropic drug resistance 3 (PDR3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 12 (TAIR:AT1G15520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q8s628|pdr13_orysa : 1503.0) Pleiotropic drug resistance protein 13 - Oryza sativa (Rice) & (reliability: 3072.0) & (original description: no original description)


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00012292-RA
Cluster HCCA clusters: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
A4A49_33262 No alias abc transporter g family member 32 0.03 Orthogroups_2024-Update
Bradi1g26040 No alias pleiotropic drug resistance 6 0.02 Orthogroups_2024-Update
Bradi2g10110 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Bradi2g43150 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Brara.C02383.1 No alias abscisic acid transporter *(ABCG31) & subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Brara.D01603.1 No alias cuticular lipid exporter *(PEC1) & subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Cre16.g655450 No alias pleiotropic drug resistance 3 0.02 Orthogroups_2024-Update
MA_949447g0010 No alias (q8gu92|pdr2_orysa : 473.0) Probable pleiotropic drug... 0.04 Orthogroups_2024-Update
PSME_00005403-RA No alias (q8gu88|pdr7_orysa : 1833.0) Putative pleiotropic drug... 0.04 Orthogroups_2024-Update
PSME_00014724-RA No alias (q76cu2|pdr1_tobac : 1860.0) Pleiotropic drug resistance... 0.04 Orthogroups_2024-Update
PSME_00015395-RA No alias (q76cu2|pdr1_tobac : 1904.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
Potri.003G049600 No alias ABC-2 and Plant PDR ABC-type transporter family protein 0.03 Orthogroups_2024-Update
Pp1s36_257V6 No alias atp-binding cassette 0.02 Orthogroups_2024-Update
Pp1s375_55V6 No alias atp-binding cassette 0.02 Orthogroups_2024-Update
Seita.2G152000.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Sopen12g033030 No alias ABC-2 type transporter 0.02 Orthogroups_2024-Update
Sopen12g034820 No alias ABC-2 type transporter 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 694 844
IPR003439 ABC_transporter-like 3 151
IPR013581 PDR_assoc 533 596
IPR013525 ABC_2_trans 305 528
IPR013525 ABC_2_trans 989 1202
No external refs found!