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  5. PSME_00012546-RA

PSME_00012546-RA


Description : (at1g02205 : 552.0) Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase, but the exact molecular function of this protein remains to be determined.; ECERIFERUM 1 (CER1); FUNCTIONS IN: aldehyde decarbonylase activity; INVOLVED IN: aldehyde catabolic process, wax biosynthetic process, cuticle development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1). & (reliability: 1104.0) & (original description: no original description)


Gene families : OG_42_0000480 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000480_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00012546-RA
Cluster HCCA clusters: Cluster_292

Target Alias Description ECC score Gene Family Method Actions
A4A49_14588 No alias protein eceriferum 1 0.02 Orthogroups_2024-Update
At5g57800 No alias Protein ECERIFERUM 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1Z0] 0.04 Orthogroups_2024-Update
Bradi3g55100 No alias Fatty acid hydroxylase superfamily 0.03 Orthogroups_2024-Update
Brara.C01174.1 No alias aldehyde-generating component *(CER3) of CER1-CER3... 0.02 Orthogroups_2024-Update
Brara.E00741.1 No alias aldehyde decarbonylase component *(CER1) of CER1-CER3... 0.03 Orthogroups_2024-Update
Brara.I05610.1 No alias aldehyde decarbonylase component *(CER1) of CER1-CER3... 0.03 Orthogroups_2024-Update
Brara.J01188.1 No alias aldehyde-generating component *(CER3) of CER1-CER3... 0.02 Orthogroups_2024-Update
Glyma.03G101200 No alias Fatty acid hydroxylase superfamily 0.03 Orthogroups_2024-Update
Glyma.12G148700 No alias beta-galactosidase 8 0.02 Orthogroups_2024-Update
LOC_Os02g56920 No alias WAX2, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os09g25850 No alias WAX2, putative, expressed 0.03 Orthogroups_2024-Update
Potri.006G177500 No alias Fatty acid hydroxylase superfamily 0.02 Orthogroups_2024-Update
Sobic.008G076200.1 No alias aldehyde decarbonylase component *(CER1) of CER1-CER3... 0.02 Orthogroups_2024-Update
Solyc03g065250 No alias Fatty acid hydroxylase superfamily protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc12g100270 No alias Fatty acid hydroxylase superfamily (AHRD V3.3 *** AT1G02205.2) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEA InterProScan predictions
BP GO:0008610 lipid biosynthetic process IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR021940 Uncharacterised_Wax2_C 430 602
IPR006694 Fatty_acid_hydroxylase 137 250
No external refs found!