PSME_00012644-RA

Description : (at4g17500 : 84.3) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.; ethylene responsive element binding factor 1 (ERF-1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 2 (TAIR:AT5G47220.1); Has 5773 Blast hits to 5650 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5761; Viruses - 2; Other Eukaryotes - 10 (source: NCBI BLink). & (q40479|erf2_tobac : 81.6) Ethylene-responsive transcription factor 2 (Ethylene-responsive element-binding factor 2) (EREBP-2) (NtERF2) - Nicotiana tabacum (Common tobacco) & (reliability: 168.6) & (original description: no original description)

Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00012644-RA
Cluster	HCCA clusters: Cluster_49

Target	Alias	Description	ECC score	Gene Family Method
A4A49_36962	No alias	ethylene-responsive transcription factor erf003	0.02	Orthogroups_2024-Update
At1g77640	No alias	Ethylene-responsive transcription factor ERF013...	0.03	Orthogroups_2024-Update
Bradi2g04000	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
Bradi2g29960	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
Bradi3g49810	No alias	Integrase-type DNA-binding superfamily protein	0.06	Orthogroups_2024-Update
Bradi5g17480	No alias	ethylene responsive element binding factor 1	0.03	Orthogroups_2024-Update
Bradi5g17610	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
Brara.F02347.1	No alias	subgroup ERF-X transcription factor	0.03	Orthogroups_2024-Update
Brara.F03308.1	No alias	transcription factor *(CRF) & subgroup ERF-VI...	0.02	Orthogroups_2024-Update
Brara.I00546.1	No alias	cutin and suberin biosynthesis transcription factor...	0.04	Orthogroups_2024-Update
Brara.K01713.1	No alias	subgroup ERF-I transcription factor	0.02	Orthogroups_2024-Update
Glyma.03G112800	No alias	ethylene-responsive element binding factor 13	0.02	Orthogroups_2024-Update
Glyma.04G067200	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
Glyma.04G238700	No alias	cytokinin response factor 4	0.03	Orthogroups_2024-Update
Glyma.05G092800	No alias	cooperatively regulated by ethylene and jasmonate 1	0.04	Orthogroups_2024-Update
Glyma.05G186700	No alias	Integrase-type DNA-binding superfamily protein	0.04	Orthogroups_2024-Update
Glyma.10G067000	No alias	C-repeat/DRE binding factor 1	0.04	Orthogroups_2024-Update
Glyma.13G236600	No alias	ERF domain protein 12	0.04	Orthogroups_2024-Update
Glyma.20G031000	No alias	related to AP2 11	0.02	Orthogroups_2024-Update
Glyma.20G195900	No alias	Integrase-type DNA-binding superfamily protein	0.03	Orthogroups_2024-Update
HORVU2Hr1G037540.1	No alias	transcription factor *(ERN1) & subgroup ERF-V...	0.03	Orthogroups_2024-Update
HORVU3Hr1G026970.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU5Hr1G080340.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os02g52670	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g27930	No alias	AP2 domain containing protein, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g09810	No alias	ethylene-responsive transcription factor, putative, expressed	0.05	Orthogroups_2024-Update
LOC_Os09g11460	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os09g11480	No alias	AP2 domain containing protein, expressed	0.02	Orthogroups_2024-Update
MA_19854g0020	No alias	(at5g21960 : 122.0) encodes a member of the DREB...	0.04	Orthogroups_2024-Update
MA_201698g0010	No alias	(at5g11590 : 124.0) encodes a member of the DREB...	0.04	Orthogroups_2024-Update
MA_2040g0010	No alias	(at5g65130 : 90.5) encodes a member of the DREB...	0.05	Orthogroups_2024-Update
MA_67841g0010	No alias	(at2g44940 : 151.0) encodes a member of the DREB...	0.04	Orthogroups_2024-Update
MA_922309g0010	No alias	(at4g17500 : 92.0) Encodes a member of the ERF (ethylene...	0.02	Orthogroups_2024-Update
PSME_00037533-RA	No alias	(at5g61890 : 108.0) encodes a member of the ERF...	0.04	Orthogroups_2024-Update
PSME_00051455-RA	No alias	(at5g21960 : 102.0) encodes a member of the DREB...	0.03	Orthogroups_2024-Update
Potri.001G079800	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Potri.001G181500	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Potri.006G054500	No alias	Integrase-type DNA-binding superfamily protein	0.02	Orthogroups_2024-Update
Potri.011G061700	No alias	ethylene response factor 1	0.03	Orthogroups_2024-Update
Seita.1G257300.1	No alias	subgroup ERF-IX transcription factor	0.02	Orthogroups_2024-Update
Seita.7G176700.1	No alias	subgroup ERF-I transcription factor	0.02	Orthogroups_2024-Update
Seita.9G516800.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.010G071700.1	No alias	subgroup ERF-VII transcription factor & transcription...	0.03	Orthogroups_2024-Update
Sobic.010G133566.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Solyc02g067020	No alias	Ethylene-responsive transcription factor (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Solyc07g054220	No alias	Ethylene-responsive transcription factor ERF053 (AHRD...	0.04	Orthogroups_2024-Update
Solyc12g005960	No alias	Ethylene-responsive transcription factor, putative (AHRD...	0.04	Orthogroups_2024-Update
Sopen02g037700	No alias	AP2 domain	0.03	Orthogroups_2024-Update
Sopen05g030960	No alias	AP2 domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004222	metalloendopeptidase activity	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
MF	GO:0016846	carbon-sulfur lyase activity	IEP	Predicted GO
CC	GO:0031012	extracellular matrix	IEP	Predicted GO
CC	GO:0044421	extracellular region part	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	42	92

External Links

No external refs found!

PSME_00012644-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation