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  5. PSME_00012711-RA

PSME_00012711-RA


Description : (at5g53190 : 133.0) Nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT1G21460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 266.0) & (original description: no original description)


Gene families : OG_42_0000052 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000052_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00012711-RA
Cluster HCCA clusters: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Glyma.18G295100 No alias Nodulin MtN3 family protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G089600.1 No alias sugar efflux transporter *(SWEET) 0.03 Orthogroups_2024-Update
MA_165733g0010 No alias (at1g21460 : 324.0) Nodulin MtN3 family protein;... 0.04 Orthogroups_2024-Update
MA_178981g0010 No alias (at1g21460 : 98.2) Nodulin MtN3 family protein; INVOLVED... 0.02 Orthogroups_2024-Update
Sopen03g028340 No alias Sugar efflux transporter for intercellular exchange 0.03 Orthogroups_2024-Update
Sopen03g028610 No alias Sugar efflux transporter for intercellular exchange 0.03 Orthogroups_2024-Update
evm.model.tig00000025.10 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005375 copper ion transmembrane transporter activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0035434 copper ion transmembrane transport IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004316 SWEET_sugar_transpr 155 241
No external refs found!