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  5. PSME_00012819-RA

PSME_00012819-RA


Description : (at5g20190 : 134.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G80130.1); Has 458 Blast hits to 304 proteins in 39 species: Archae - 0; Bacteria - 85; Metazoa - 7; Fungi - 10; Plants - 317; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). & (reliability: 268.0) & (original description: no original description)


Gene families : OG_42_0000923 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000923_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00012819-RA
Cluster HCCA clusters: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Glyma.13G165800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
LOC_Os10g42610 No alias expressed protein 0.02 Orthogroups_2024-Update
MA_19157g0020 No alias (at4g17940 : 139.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_96077g0020 No alias (at5g20190 : 81.3) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_9727370g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00045123-RA No alias (at5g54830 : 107.0) DOMON domain-containing protein /... 0.03 Orthogroups_2024-Update
Seita.9G309000.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!