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  5. PSME_00012980-RA

PSME_00012980-RA


Description : (at4g37080 : 234.0) Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2). & (reliability: 468.0) & (original description: no original description)


Gene families : OG_42_0000727 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000727_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00012980-RA
Cluster HCCA clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G066516 No alias Protein of unknown function, DUF547 0.03 Orthogroups_2024-Update
Glyma.05G090400 No alias Protein of unknown function, DUF547 0.03 Orthogroups_2024-Update
Glyma.14G080400 No alias Protein of unknown function, DUF547 0.03 Orthogroups_2024-Update
PSME_00006146-RA No alias (at5g42690 : 117.0) Protein of unknown function, DUF547;... 0.01 Orthogroups_2024-Update
PSME_00026188-RA No alias (at4g37080 : 202.0) Protein of unknown function, DUF547;... 0.05 Orthogroups_2024-Update
PSME_00027940-RA No alias (at4g37080 : 127.0) Protein of unknown function, DUF547;... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006869 DUF547 417 517
IPR025757 MIP1_Leuzipper 53 131
No external refs found!