PSME_00012992-RA

Description : (p41640|psab_pinth : 296.0) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB) (PSI-B) - Pinus thunbergii (Green pine) (Japanese black pine) & (atcg00340 : 284.0) Encodes the D1 subunit of photosystem I and II reaction centers.; PSAB; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis, light harvesting in photosystem I; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I psaB (InterPro:IPR006244), Photosystem I, PsaA/PsaB (InterPro:IPR001280), Photosystem I psaA/psaB, conserved site (InterPro:IPR020586); BEST Arabidopsis thaliana protein match is: Photosystem I, PsaA/PsaB protein (TAIR:ATCG00350.1). & (reliability: 568.0) & (original description: no original description)

Gene families : OG_42_0000633 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000633_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00012992-RA
Cluster	HCCA clusters: Cluster_80

Target	Alias	Description	ECC score	Gene Family Method
HORVU5Hr1G064640.2	No alias	apoprotein PsaA of PS-I complex	0.02	Orthogroups_2024-Update
Solyc01g017330	No alias	Photosystem I P700 chlorophyll a apoprotein A1 (AHRD...	0.02	Orthogroups_2024-Update
Solyc10g017910	No alias	Photosystem I P700 chlorophyll a apoprotein A2 (AHRD...	0.02	Orthogroups_2024-Update
Solyc12g033070	No alias	NADH dehydrogenase subunit (AHRD V3.3 - Q8HSC3_9SOLN)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009522	photosystem I	IEA	InterProScan predictions
CC	GO:0009579	thylakoid	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	IEA	InterProScan predictions
CC	GO:0016021	integral component of membrane	IEA	InterProScan predictions
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044436	thylakoid part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003917	DNA topoisomerase type I activity	IEP	Predicted GO
MF	GO:0003993	acid phosphatase activity	IEP	Predicted GO
MF	GO:0004612	phosphoenolpyruvate carboxykinase (ATP) activity	IEP	Predicted GO
MF	GO:0005244	voltage-gated ion channel activity	IEP	Predicted GO
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Predicted GO
MF	GO:0005253	anion channel activity	IEP	Predicted GO
MF	GO:0005254	chloride channel activity	IEP	Predicted GO
BP	GO:0006821	chloride transport	IEP	Predicted GO
MF	GO:0008308	voltage-gated anion channel activity	IEP	Predicted GO
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016791	phosphatase activity	IEP	Predicted GO
MF	GO:0016830	carbon-carbon lyase activity	IEP	Predicted GO
MF	GO:0016831	carboxy-lyase activity	IEP	Predicted GO
MF	GO:0022832	voltage-gated channel activity	IEP	Predicted GO
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Predicted GO
MF	GO:0046983	protein dimerization activity	IEP	Predicted GO
BP	GO:0051276	chromosome organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001280	PSI_PsaA/B	118	279
IPR001280	PSI_PsaA/B	3	86

External Links

No external refs found!

PSME_00012992-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation