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  5. PSME_00013028-RA

PSME_00013028-RA


Description : (at5g12100 : 393.0) pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G65560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 296.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 786.0) & (original description: no original description)


Gene families : OG_42_0123332 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00013028-RA
Cluster HCCA clusters: Cluster_142


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 374 406
IPR002885 Pentatricopeptide_repeat 136 165
IPR002885 Pentatricopeptide_repeat 646 665
IPR002885 Pentatricopeptide_repeat 618 639
IPR002885 Pentatricopeptide_repeat 307 354
IPR002885 Pentatricopeptide_repeat 171 214
IPR002885 Pentatricopeptide_repeat 482 531
IPR002885 Pentatricopeptide_repeat 556 599
IPR002885 Pentatricopeptide_repeat 412 461
IPR002885 Pentatricopeptide_repeat 238 286
No external refs found!