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  5. PSME_00013044-RA

PSME_00013044-RA


Description : (at3g13224 : 257.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G40490.1); Has 77800 Blast hits to 37058 proteins in 1622 species: Archae - 33; Bacteria - 18580; Metazoa - 32661; Fungi - 6344; Plants - 11400; Viruses - 392; Other Eukaryotes - 8390 (source: NCBI BLink). & (q08935|roc1_nicsy : 97.8) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A) - Nicotiana sylvestris (Wood tobacco) & (reliability: 514.0) & (original description: no original description)


Gene families : OG_42_0000197 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00013044-RA
Cluster HCCA clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Bradi1g37692 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
PSME_00052866-RA No alias (at3g07810 : 196.0) RNA-binding (RRM/RBD/RNP motifs)... 0.04 Orthogroups_2024-Update
Sobic.001G075800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G222900.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Predicted GO
BP GO:0006450 regulation of translational fidelity IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 1 38
IPR000504 RRM_dom 58 125
No external refs found!