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Description : (at4g13650 : 657.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 139.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1314.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00013107-RA | |
| Cluster | HCCA clusters: Cluster_48 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At1g08070 | No alias | Pentatricopeptide repeat-containing protein At1g08070,... | 0.05 | Orthogroups_2024-Update | |
| At1g33350 | No alias | Pentatricopeptide repeat-containing protein At1g33350... | 0.04 | Orthogroups_2024-Update | |
| Glyma.10G277600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| MA_25515g0010 | No alias | (at4g13650 : 660.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| MA_28051g0010 | No alias | (at1g11290 : 601.0) Pentatricopeptide Repeat Protein... | 0.05 | Orthogroups_2024-Update | |
| MA_2984g0010 | No alias | (at4g02750 : 591.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update | |
| MA_519985g0010 | No alias | (at3g03580 : 679.0) Tetratricopeptide repeat (TPR)-like... | 0.06 | Orthogroups_2024-Update | |
| MA_75255g0010 | No alias | (at4g33170 : 685.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| MA_77675g0010 | No alias | (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
| Potri.001G217600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.001G322100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.003G074500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.004G059400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.006G245300 | No alias | Function unknown | 0.02 | Orthogroups_2024-Update | |
| Potri.015G047600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.017G083900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.017G091600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.018G067500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Pp1s68_207V6 | No alias | ppr gene for putative pentatricopeptide repeat-like protein PPR | 0.03 | Orthogroups_2024-Update | |
| Seita.6G051400.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.9G489500.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Solyc01g081560 | No alias | LOW QUALITY:Pentatricopeptide repeat-containing protein... | 0.02 | Orthogroups_2024-Update | |
| Solyc01g090510 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.02 | Orthogroups_2024-Update | |
| Solyc01g095160 | No alias | Pentatricopeptide repeat (PPR) superfamily protein (AHRD... | 0.02 | Orthogroups_2024-Update | |
| Solyc04g064750 | No alias | Pentatricopeptide repeat superfamily protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc07g055310 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc11g011860 | No alias | Pentatricopeptide repeat-containing protein family (AHRD... | 0.02 | Orthogroups_2024-Update | |
| Solyc11g071370 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
| Solyc12g042400 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Sopen09g004810 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004650 | polygalacturonase activity | IEP | Predicted GO |
| BP | GO:0045017 | glycerolipid biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 524 | 553 |
| IPR002885 | Pentatricopeptide_repeat | 238 | 252 |
| IPR002885 | Pentatricopeptide_repeat | 763 | 792 |
| IPR002885 | Pentatricopeptide_repeat | 212 | 234 |
| IPR002885 | Pentatricopeptide_repeat | 43 | 65 |
| IPR002885 | Pentatricopeptide_repeat | 496 | 522 |
| IPR002885 | Pentatricopeptide_repeat | 395 | 420 |
| IPR002885 | Pentatricopeptide_repeat | 698 | 722 |
| IPR032867 | DYW_dom | 797 | 920 |
| IPR002885 | Pentatricopeptide_repeat | 622 | 670 |
| IPR002885 | Pentatricopeptide_repeat | 421 | 468 |
| IPR002885 | Pentatricopeptide_repeat | 134 | 181 |
| IPR002885 | Pentatricopeptide_repeat | 320 | 367 |
| No external refs found! |