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  5. PSME_00013183-RA

PSME_00013183-RA


Description : (at5g60020 : 725.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 17 (LAC17); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 2 (TAIR:AT2G29130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p14133|aso_cucsa : 213.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Cucumis sativus (Cucumber) & (reliability: 1450.0) & (original description: no original description)


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00013183-RA
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
A4A49_20277 No alias laccase-11 0.02 Orthogroups_2024-Update
At2g30210 No alias Laccase-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56YT0] 0.02 Orthogroups_2024-Update
Bradi2g23350 No alias laccase 17 0.01 Orthogroups_2024-Update
Bradi2g54680 No alias laccase 17 0.03 Orthogroups_2024-Update
Glyma.10G219200 No alias laccase 14 0.02 Orthogroups_2024-Update
Glyma.18G023600 No alias laccase 5 0.02 Orthogroups_2024-Update
PSME_00005164-RA No alias (at5g05390 : 649.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00028638-RA No alias (at5g05390 : 656.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
Pp1s17_180V6 No alias laccase 90c 0.02 Orthogroups_2024-Update
Sopen09g005780 No alias Multicopper oxidase 0.02 Orthogroups_2024-Update

  • Type GO Term Name Evidence Source
    MF GO:0005507 copper ion binding IEA InterProScan predictions
    MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
    BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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    Type GO Term Name Evidence Source
    MF GO:0004601 peroxidase activity IEP Predicted GO
    BP GO:0006813 potassium ion transport IEP Predicted GO
    MF GO:0008146 sulfotransferase activity IEP Predicted GO
    MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
    MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
    MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
    BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
    MF GO:0016209 antioxidant activity IEP Predicted GO
    MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
    MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Predicted GO
    MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
    BP GO:0030001 metal ion transport IEP Predicted GO
    BP GO:0034220 ion transmembrane transport IEP Predicted GO
    MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
    BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
    BP GO:0098655 cation transmembrane transport IEP Predicted GO
    BP GO:0098660 inorganic ion transmembrane transport IEP Predicted GO
    BP GO:0098662 inorganic cation transmembrane transport IEP Predicted GO
    InterPro domains Description Start Stop
    IPR011706 Cu-oxidase_2 475 591
    IPR001117 Cu-oxidase 188 341
    IPR011707 Cu-oxidase_3 63 176
    No external refs found!