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  5. PSME_00013185-RA

PSME_00013185-RA


Description : (at3g03740 : 220.0) BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 406.0) & (original description: no original description)


Gene families : OG_42_0000025 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000025_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00013185-RA
Cluster HCCA clusters: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G172210 No alias BTB-POZ and MATH domain 2 0.03 Orthogroups_2024-Update
Glyma.19G116300 No alias BTB-POZ and MATH domain 4 0.02 Orthogroups_2024-Update
PSME_00005951-RA No alias (at3g03740 : 236.0) BTB-POZ and MATH domain 4 (BPM4);... 0.04 Orthogroups_2024-Update
PSME_00025854-RA No alias (at3g03740 : 139.0) BTB-POZ and MATH domain 4 (BPM4);... 0.03 Orthogroups_2024-Update
PSME_00026967-RA No alias (at3g03740 : 218.0) BTB-POZ and MATH domain 4 (BPM4);... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006450 regulation of translational fidelity IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000210 BTB/POZ_dom 87 161
No external refs found!