Description : (p57997|if2c_phavu : 551.0) Translation initiation factor IF-2, chloroplast precursor (PvIF2cp) - Phaseolus vulgaris (Kidney bean) (French bean) & (at1g17220 : 540.0) Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.; fu-gaeri1 (FUG1); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF-2, N-terminal (InterPro:IPR006847), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Initiation factor 2 (InterPro:IPR000178), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation initiation factor 2, small GTP-binding protein (TAIR:AT4G11160.1); Has 64472 Blast hits to 64325 proteins in 4737 species: Archae - 1215; Bacteria - 42273; Metazoa - 2198; Fungi - 2344; Plants - 1110; Viruses - 4; Other Eukaryotes - 15328 (source: NCBI BLink). & (reliability: 1080.0) & (original description: no original description)
Gene families : OG_42_0001965 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001965_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00013307-RA | |
Cluster | HCCA clusters: Cluster_175 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At1g17220 | No alias | Translation initiation factor IF-2, chloroplastic... | 0.03 | Orthogroups_2024-Update | |
Cre07.g341850 | No alias | Translation initiation factor 2, small GTP-binding protein | 0.01 | Orthogroups_2024-Update | |
Glyma.08G174200 | No alias | Translation initiation factor 2, small GTP-binding protein | 0.06 | Orthogroups_2024-Update | |
Glyma.15G253000 | No alias | Translation initiation factor 2, small GTP-binding protein | 0.03 | Orthogroups_2024-Update | |
Glyma.19G224000 | No alias | Translation initiation factor 2, small GTP-binding protein | 0.03 | Orthogroups_2024-Update | |
LOC_Os05g49970 | No alias | translation initiation factor IF-2, chloroplast... | 0.04 | Orthogroups_2024-Update | |
MA_93993g0010 | No alias | (at1g17220 : 212.0) Encodes a chloroplast localized... | 0.03 | Orthogroups_2024-Update | |
Mp3g09840.1 | No alias | IF-2 translation initiation factor | 0.03 | Orthogroups_2024-Update | |
Potri.001G436300 | No alias | Translation initiation factor 2, small GTP-binding protein | 0.03 | Orthogroups_2024-Update | |
Pp1s59_148V6 | No alias | translation initiation factor if-2 | 0.03 | Orthogroups_2024-Update | |
Seita.1G380500.1 | No alias | translation initiation factor *(IF-2) | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00020903.32 | No alias | (at4g11160 : 310.0) Translation initiation factor 2,... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003924 | GTPase activity | IEA | InterProScan predictions |
MF | GO:0005525 | GTP binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001505 | regulation of neurotransmitter levels | IEP | Predicted GO |
MF | GO:0002161 | aminoacyl-tRNA editing activity | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
MF | GO:0004329 | formate-tetrahydrofolate ligase activity | IEP | Predicted GO |
MF | GO:0004375 | glycine dehydrogenase (decarboxylating) activity | IEP | Predicted GO |
MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
MF | GO:0005534 | galactose binding | IEP | Predicted GO |
BP | GO:0006082 | organic acid metabolic process | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006414 | translational elongation | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006536 | glutamate metabolic process | IEP | Predicted GO |
BP | GO:0006537 | glutamate biosynthetic process | IEP | Predicted GO |
BP | GO:0006544 | glycine metabolic process | IEP | Predicted GO |
BP | GO:0006546 | glycine catabolic process | IEP | Predicted GO |
MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Predicted GO |
MF | GO:0008144 | drug binding | IEP | Predicted GO |
BP | GO:0009063 | cellular amino acid catabolic process | IEP | Predicted GO |
BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009069 | serine family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009071 | serine family amino acid catabolic process | IEP | Predicted GO |
BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0010629 | negative regulation of gene expression | IEP | Predicted GO |
MF | GO:0015930 | glutamate synthase activity | IEP | Predicted GO |
BP | GO:0016054 | organic acid catabolic process | IEP | Predicted GO |
BP | GO:0016311 | dephosphorylation | IEP | Predicted GO |
BP | GO:0016458 | gene silencing | IEP | Predicted GO |
MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Predicted GO |
MF | GO:0016642 | oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Predicted GO |
MF | GO:0019842 | vitamin binding | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
MF | GO:0030976 | thiamine pyrophosphate binding | IEP | Predicted GO |
BP | GO:0031047 | gene silencing by RNA | IEP | Predicted GO |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0042133 | neurotransmitter metabolic process | IEP | Predicted GO |
BP | GO:0042135 | neurotransmitter catabolic process | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0043436 | oxoacid metabolic process | IEP | Predicted GO |
BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | Predicted GO |
BP | GO:0043650 | dicarboxylic acid biosynthetic process | IEP | Predicted GO |
BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
BP | GO:0046395 | carboxylic acid catabolic process | IEP | Predicted GO |
MF | GO:0048029 | monosaccharide binding | IEP | Predicted GO |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | Predicted GO |
MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Predicted GO |
MF | GO:0051540 | metal cluster binding | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Predicted GO |
BP | GO:1901606 | alpha-amino acid catabolic process | IEP | Predicted GO |
MF | GO:1901681 | sulfur compound binding | IEP | Predicted GO |
MF | GO:2001070 | starch binding | IEP | Predicted GO |
No external refs found! |