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  5. PSME_00013410-RA

PSME_00013410-RA


Description : (at5g35550 : 181.0) TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.; TRANSPARENT TESTA 2 (TT2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 5 (TAIR:AT3G13540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p10290|mybc_maize : 180.0) Anthocyanin regulatory C1 protein - Zea mays (Maize) & (reliability: 344.0) & (original description: no original description)


Gene families : OG_42_0000002 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00013410-RA
Cluster HCCA clusters: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
A4A49_00243 No alias transcription factor myb39 0.03 Orthogroups_2024-Update
A4A49_01152 No alias transcription factor myb36 0.03 Orthogroups_2024-Update
A4A49_12286 No alias transcription factor myb30 0.03 Orthogroups_2024-Update
A4A49_20218 No alias transcription factor myb39 0.03 Orthogroups_2024-Update
A4A49_28008 No alias transcription repressor myb5 0.05 Orthogroups_2024-Update
A4A49_33530 No alias transcription factor myb26 0.03 Orthogroups_2024-Update
A4A49_39488 No alias myb-related protein pp2 0.02 Orthogroups_2024-Update
At1g74080 No alias Transcription factor MYB122... 0.03 Orthogroups_2024-Update
At3g11440 No alias Transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A178VKX5] 0.03 Orthogroups_2024-Update
At5g59780 No alias Transcription factor MYB59... 0.02 Orthogroups_2024-Update
Bradi1g26920 No alias myb domain protein 67 0.02 Orthogroups_2024-Update
Bradi1g61160 No alias myb domain protein 96 0.03 Orthogroups_2024-Update
Bradi1g64687 No alias myb domain protein 12 0.03 Orthogroups_2024-Update
Bradi2g48521 No alias Duplicated homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g30033 No alias myb domain protein 36 0.02 Orthogroups_2024-Update
Bradi4g22637 No alias myb domain protein 94 0.03 Orthogroups_2024-Update
Bradi4g26180 No alias myb domain protein 60 0.02 Orthogroups_2024-Update
Bradi4g29796 No alias myb domain protein 20 0.03 Orthogroups_2024-Update
Bradi5g20130 No alias myb domain protein 63 0.03 Orthogroups_2024-Update
Brara.A00330.1 No alias MYB class-R2R3 subgroup-4 transcription factor 0.03 Orthogroups_2024-Update
Brara.A03854.1 No alias MYB class-R2R3 subgroup-10/24 transcription factor 0.02 Orthogroups_2024-Update
Brara.B01071.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update
Brara.B01492.1 No alias MYB class-R2R3 transcription factor 0.02 Orthogroups_2024-Update
Brara.C02944.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.02 Orthogroups_2024-Update
Brara.C03910.1 No alias MYB class-R2R3 subgroup-2 transcription factor 0.03 Orthogroups_2024-Update
Brara.F02110.1 No alias MYB class-R2R3 subgroup-1 transcription factor 0.03 Orthogroups_2024-Update
Brara.F02806.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.02 Orthogroups_2024-Update
Brara.G01033.1 No alias MYB class-R2R3 subgroup-4 transcription factor 0.02 Orthogroups_2024-Update
Brara.G03164.1 No alias MYB class-R2R3 subgroup-1 transcription factor 0.04 Orthogroups_2024-Update
Brara.G03210.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.H00653.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.H01124.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update
Brara.I00299.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.03 Orthogroups_2024-Update
Brara.I01264.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G095904 No alias myb domain protein 15 0.03 Orthogroups_2024-Update
GRMZM2G139688 No alias myb domain protein 65 0.03 Orthogroups_2024-Update
GRMZM2G158700 No alias myb domain protein 112 0.02 Orthogroups_2024-Update
GRMZM2G159547 No alias myb domain protein 93 0.02 Orthogroups_2024-Update
GRMZM2G162709 No alias myb domain protein 62 0.02 Orthogroups_2024-Update
GRMZM2G167829 No alias myb domain protein 87 0.03 Orthogroups_2024-Update
GRMZM2G169356 No alias myb domain protein 20 0.02 Orthogroups_2024-Update
GRMZM2G173633 No alias myb domain protein 103 0.03 Orthogroups_2024-Update
GRMZM2G431156 No alias myb domain protein 6 0.02 Orthogroups_2024-Update
Glyma.03G013300 No alias myb domain protein 17 0.02 Orthogroups_2024-Update
Glyma.03G250600 No alias myb domain protein 15 0.03 Orthogroups_2024-Update
Glyma.05G211200 No alias myb domain protein 103 0.02 Orthogroups_2024-Update
Glyma.06G003800 No alias myb domain protein 4 0.03 Orthogroups_2024-Update
Glyma.06G188400 No alias Duplicated homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G193600 No alias myb domain protein 94 0.03 Orthogroups_2024-Update
Glyma.06G300300 No alias myb domain protein 15 0.03 Orthogroups_2024-Update
Glyma.07G242600 No alias myb domain protein 111 0.02 Orthogroups_2024-Update
Glyma.09G032100 No alias myb domain protein 78 0.02 Orthogroups_2024-Update
Glyma.09G206200 No alias myb domain protein 39 0.02 Orthogroups_2024-Update
Glyma.09G235600 No alias myb domain protein 106 0.02 Orthogroups_2024-Update
Glyma.11G107100 No alias myb domain protein 4 0.02 Orthogroups_2024-Update
Glyma.12G032200 No alias myb domain protein 32 0.02 Orthogroups_2024-Update
Glyma.12G106400 No alias MYB-like 102 0.03 Orthogroups_2024-Update
Glyma.12G237500 No alias myb domain protein 83 0.01 Orthogroups_2024-Update
Glyma.13G339900 No alias myb domain protein 83 0.03 Orthogroups_2024-Update
Glyma.15G041100 No alias myb domain protein 48 0.03 Orthogroups_2024-Update
Glyma.18G040700 No alias myb domain protein 43 0.02 Orthogroups_2024-Update
Glyma.19G055800 No alias myb domain protein 40 0.02 Orthogroups_2024-Update
HORVU0Hr1G005100.1 No alias MYB class-R2R3 transcription factor 0.02 Orthogroups_2024-Update
HORVU1Hr1G084170.1 No alias MYB class-R2R3 subgroup-14 transcription factor 0.02 Orthogroups_2024-Update
LOC_Os01g49160 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g36890 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g49310 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g43580 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g44090 No alias myb-related protein Hv33, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g33150 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g47460 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g37970 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
MA_246142g0010 No alias (at4g38620 : 256.0) Encodes a R2R3 MYB protein which is... 0.03 Orthogroups_2024-Update
MA_308669g0010 No alias (p20025|myb38_maize : 236.0) Myb-related protein Zm38 -... 0.03 Orthogroups_2024-Update
MA_355131g0010 No alias (at3g28910 : 186.0) transcription factor myb homologue;... 0.03 Orthogroups_2024-Update
PSME_00001482-RA No alias (at4g22680 : 248.0) Encodes a putative transcription... 0.03 Orthogroups_2024-Update
PSME_00010776-RA No alias (at1g22640 : 177.0) MYB-type transcription factor (MYB3)... 0.02 Orthogroups_2024-Update
PSME_00013409-RA No alias "(at2g47460 : 185.0) ""MYB12 belongs to subgroup 7 of... 0.04 Orthogroups_2024-Update
PSME_00014640-RA No alias (at3g27810 : 179.0) Encodes a member of the R2R3-MYB... 0.04 Orthogroups_2024-Update
PSME_00014838-RA No alias (at3g12720 : 234.0) Member of the R2R3 factor gene... 0.04 Orthogroups_2024-Update
PSME_00036270-RA No alias (at5g65790 : 241.0) Encodes a putative MYB transcription... 0.04 Orthogroups_2024-Update
PSME_00041883-RA No alias (at3g61250 : 276.0) Member of the R2R3 factor gene... 0.04 Orthogroups_2024-Update
PSME_00045448-RA No alias (at4g38620 : 253.0) Encodes a R2R3 MYB protein which is... 0.02 Orthogroups_2024-Update
PSME_00049306-RA No alias (at5g15310 : 258.0) Member of the R2R3 factor gene... 0.03 Orthogroups_2024-Update
PSME_00050866-RA No alias (at1g22640 : 150.0) MYB-type transcription factor (MYB3)... 0.03 Orthogroups_2024-Update
PSME_00051072-RA No alias (at4g34990 : 160.0) Member of the R2R3 factor gene... 0.02 Orthogroups_2024-Update
PSME_00051224-RA No alias (at5g15310 : 212.0) Member of the R2R3 factor gene... 0.05 Orthogroups_2024-Update
PSME_00052407-RA No alias (at4g09460 : 211.0) Encodes myb6 DNA-binding protein.;... 0.03 Orthogroups_2024-Update
PSME_00053285-RA No alias (at4g38620 : 263.0) Encodes a R2R3 MYB protein which is... 0.02 Orthogroups_2024-Update
Potri.005G001600 No alias myb domain protein 61 0.03 Orthogroups_2024-Update
Potri.006G170800 No alias myb domain protein 36 0.03 Orthogroups_2024-Update
Potri.006G221500 No alias Duplicated homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G234200 No alias myb domain protein 68 0.03 Orthogroups_2024-Update
Potri.008G122100 No alias myb domain protein 62 0.03 Orthogroups_2024-Update
Potri.010G149900 No alias myb domain protein 108 0.05 Orthogroups_2024-Update
Potri.012G140500 No alias myb domain protein 19 0.03 Orthogroups_2024-Update
Potri.012G140700 No alias myb domain protein 17 0.02 Orthogroups_2024-Update
Potri.014G100800 No alias myb domain protein 7 0.02 Orthogroups_2024-Update
Potri.017G086300 No alias myb domain protein 16 0.03 Orthogroups_2024-Update
Potri.019G050900 No alias myb domain protein 9 0.02 Orthogroups_2024-Update
Pp1s284_57V6 No alias MDA7.17; myb family transcription factor [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Pp1s61_196V6 No alias myb transcription factor myb92 0.01 Orthogroups_2024-Update
Seita.1G117000.1 No alias regulatory protein *(LAF1) of phytochrome signalling... 0.02 Orthogroups_2024-Update
Seita.1G239400.1 No alias MYB class-R2R3 subgroup-2 transcription factor 0.02 Orthogroups_2024-Update
Seita.2G351400.1 No alias MYB class-R2R3 subgroup-11 transcription factor 0.01 Orthogroups_2024-Update
Seita.2G438400.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.02 Orthogroups_2024-Update
Seita.7G161400.1 No alias MYB class-R2R3 transcription factor 0.02 Orthogroups_2024-Update
Seita.7G284800.1 No alias MYB class-R2R3 subgroup-4 transcription factor & MYB... 0.02 Orthogroups_2024-Update
Seita.8G237700.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G183100.1 No alias MYB class-R2R3 subgroup-18 transcription factor 0.02 Orthogroups_2024-Update
Sobic.001G358900.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G404400.2 No alias transcriptional regulator *(TDF1) & MYB class-R2R3... 0.02 Orthogroups_2024-Update
Sobic.002G275500.3 No alias MYB class-R2R3 transcription factor 0.02 Orthogroups_2024-Update
Sobic.004G216900.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update
Sobic.005G020200.2 No alias MYB class-R2R3 subgroup-1 transcription factor 0.02 Orthogroups_2024-Update
Sobic.005G155900.1 No alias MYB class-R2R3 subgroup-1 transcription factor 0.01 Orthogroups_2024-Update
Sobic.008G055800.1 No alias MYB class-R2R3 subgroup-4 transcription factor 0.02 Orthogroups_2024-Update
Sobic.008G187001.1 No alias MYB class-R2R3 subgroup-14 transcription factor 0.02 Orthogroups_2024-Update
Solyc01g010910 No alias MYB-related transcription factor (AHRD V3.3 *** A0A059PRK4_SALMI) 0.02 Orthogroups_2024-Update
Solyc03g116100 No alias R2R3MYB transcription factor 31 0.03 Orthogroups_2024-Update
Solyc07g008010 No alias R2R3MYB transcription factor 82 0.02 Orthogroups_2024-Update
Solyc07g053230 No alias R2R3MYB transcription factor 83 0.02 Orthogroups_2024-Update
Solyc08g082890 No alias R2R3MYB transcription factor 9 0.02 Orthogroups_2024-Update
Solyc10g005460 No alias MYB transcription factor (AHRD V3.3 *** A0A0U3IU11_MESCR) 0.02 Orthogroups_2024-Update
Solyc10g008700 No alias R2R3MYB transcription factor 49 0.04 Orthogroups_2024-Update
Solyc11g011050 No alias R2R3MYB transcription factor 43 0.03 Orthogroups_2024-Update
Solyc11g073120 No alias R2R3MYB transcription factor 58 0.02 Orthogroups_2024-Update
Solyc12g099120 No alias Abscisic acid induced MYB1 0.03 Orthogroups_2024-Update
Sopen06g027120 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update
Sopen10g025190 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 72 119
IPR001005 SANT/Myb 125 170
No external refs found!