PSME_00013425-RA

Description : (at2g44580 : 254.0) zinc ion binding; CONTAINS InterPro DOMAIN/s: Sister chromatid cohesion protein DCC1 (InterPro:IPR019128); Has 214 Blast hits to 211 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 508.0) & (original description: no original description)

Gene families : OG_42_0002192 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002192_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00013425-RA
Cluster	HCCA clusters: Cluster_44

Target	Alias	Description	ECC score	Gene Family Method
PSME_00000773-RA	No alias	(at2g44580 : 255.0) zinc ion binding; CONTAINS InterPro...	0.05	Orthogroups_2024-Update
PSME_00011879-RA	No alias	(at2g44580 : 251.0) zinc ion binding; CONTAINS InterPro...	0.05	Orthogroups_2024-Update
PSME_00013604-RA	No alias	(at2g44580 : 208.0) zinc ion binding; CONTAINS InterPro...	0.05	Orthogroups_2024-Update
PSME_00036867-RA	No alias	(at2g44580 : 256.0) zinc ion binding; CONTAINS InterPro...	0.04	Orthogroups_2024-Update
PSME_00040667-RA	No alias	(at2g44580 : 270.0) zinc ion binding; CONTAINS InterPro...	0.04	Orthogroups_2024-Update
PSME_00054544-RA	No alias	(at2g44580 : 232.0) zinc ion binding; CONTAINS InterPro...	0.05	Orthogroups_2024-Update
Sopen01g035220	No alias	Uncharacterized conserved protein (DUF2036)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007062	sister chromatid cohesion	None	Extended
BP	GO:0007064	mitotic sister chromatid cohesion	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
CC	GO:0031390	Ctf18 RFC-like complex	IEA	InterProScan predictions
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:1903047	mitotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006020	inositol metabolic process	IEP	Predicted GO
BP	GO:0006066	alcohol metabolic process	IEP	Predicted GO
MF	GO:0008964	phosphoenolpyruvate carboxylase activity	IEP	Predicted GO
BP	GO:0009690	cytokinin metabolic process	IEP	Predicted GO
BP	GO:0010817	regulation of hormone levels	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016829	lyase activity	IEP	Predicted GO
MF	GO:0016831	carboxy-lyase activity	IEP	Predicted GO
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	Predicted GO
BP	GO:0019310	inositol catabolic process	IEP	Predicted GO
BP	GO:0019751	polyol metabolic process	IEP	Predicted GO
BP	GO:0034754	cellular hormone metabolic process	IEP	Predicted GO
BP	GO:0042445	hormone metabolic process	IEP	Predicted GO
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	Predicted GO
BP	GO:0046164	alcohol catabolic process	IEP	Predicted GO
BP	GO:0046174	polyol catabolic process	IEP	Predicted GO
MF	GO:0050113	inositol oxygenase activity	IEP	Predicted GO
BP	GO:0055114	oxidation-reduction process	IEP	Predicted GO
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR019128	Dcc1	61	340

External Links

No external refs found!

PSME_00013425-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation